Evidence map›Paper›PMID 21829673›Full record

ArticlePloS one2011

Association between HLA class I and class II alleles and the outcome of West Nile virus infection: an exploratory study.

Marion C Lanteri, Zhanna Kaidarova, Trevor Peterson, Steven Cate, Brian Custer, Shiquan Wu, Maria Agapova, Jacqueline P Law, Thomas Bielawny, Frank Plummer and 6 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Determinants governing T cell receptor α/β-chain pairing in repertoire formation of identical twins.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  6. Article
  7. Review
  8. Host genetic control of mosquito-borne Flavivirus infections.Mammalian genome : official journal of the International Mammalian Genome Society · 2018
    Review
  9. Article
  10. Review
  11. Influence of IFNL3 and HLA-DPB1 genotype on postpartum control of hepatitis C virus replication and T-cell recovery.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 2 countries.

Marion C LanteriBlood Systems Research Institute, San Francisco, California, United States of America. mlanteri@bloodsystems.org
Zhanna Kaidarova
Trevor Peterson
Steven Cate
Brian Custer
Shiquan Wu
Maria Agapova
Jacqueline P Law
Thomas Bielawny
Frank Plummer
Leslie H Tobler
Mark Loeb
Michael P Busch
Jonathan Bramson
Ma Luo
Philip J Norris
Blood Systems Research Institute · USPublic Health Agency of Canada · CAMcMaster University · CAUniversity of California, San Francisco · USUniversity of Manitoba · CAUniversity of Oklahoma Health Sciences Center · US

Funding

Viral/Immune parameters of Dengue and WNV in donors: blood safety implicationsRC2HL101632 · NHLBI · VITALANT · PI BUSCH, MICHAEL PAUL · 2009 to 2010
$2.1M
NHLBI NIH HHS RC2 HL101632NHLBI NIH HHS RC2HL101632PHS HHS R01-C1000214
6 · The paper itself

Abstract

backgroundWest Nile virus (WNV) infection is asymptomatic in most individuals, with a minority developing symptoms ranging from WNV fever to serious neuroinvasive disease. This study investigated the impact of host HLA on the outcome of WNV disease.

methodsA cohort of 210 non-Hispanic mostly white WNV(+) subjects from Canada and the U.S. were typed for HLA-A, B, C, DP, DQ, and DR. The study subjects were divided into three WNV infection outcome groups: asymptomatic (AS), symptomatic (S), and neuroinvasive disease (ND). Allele frequency distribution was compared pair-wise between the AS, S, and ND groups using χ2 and Fisher's exact tests and P values were corrected for multiple comparisons (Pc). Allele frequencies were compared between the groups and the North American population (NA) used as a control group. Logistic regression analysis was used to evaluate the potential synergistic effect of age and HLA allele phenotype on disease outcome.

resultsThe alleles HLA-A*68, C*08 and DQB*05 were more frequently associated with severe outcomes (ND vs. AS, P(A*68) = 0.013/Pc = 0.26, P(C*08) = 0.0075/Pc = 0.064, and P(DQB1*05) = 0.029/Pc = 0.68), However the apparent DQB1*05 association was driven by age. The alleles HLA-B*40 and C*03 were more frequently associated with asymptomatic outcome (AS vs. S, P(B*40) = 0.021/Pc = 0.58 and AS vs. ND P(C*03) = 0.039/Pc = 0.64) and their frequencies were lower within WNV(+) subjects with neuroinvasive disease than within the North American population (NA vs. S, P(B*40) = 0.029 and NA vs. ND, P(C*03) = 0.032).

conclusionsHost HLA may be associated with the outcome of WNV disease; HLA-A*68 and C*08 might function as "susceptible" alleles, whereas HLA-B*40 and C*03 might function as "protective" alleles.

Indexed as

AllelesCohort StudiesHistocompatibility Antigens Class IHistocompatibility Antigens Class IIHumansPhenotypeWest Nile FeverHistocompatibility Antigens Class IHistocompatibility Antigens Class II

Identifiers

PMID21829673
PMCPMC3148246
OpenAlexW2156746746

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.