Evidence map›Paper›PMID 21829382›Full record

ArticlePLoS genetics2011

An epigenetic switch involving overlapping fur and DNA methylation optimizes expression of a type VI secretion gene cluster.

Yannick R Brunet, Christophe S Bernard, Marthe Gavioli, Roland Lloubès, Eric Cascales

Abstract read
In one paragraph

Article in PLoS genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 82 papers.

0numbers the graph read from it
0cells of the map it votes in
82citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

82 citing papers in PubMed.

  1. TheMicroorganisms · 2026
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  7. Two cysteines control Tse1 secretion by H1-T6SS in Pseudomonas aeruginosa.Protein science : a publication of the Protein Society · 2025
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. A heritable iron memory enables decision-making inProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Integration of themBio · 2022
    Article

22 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Yannick R BrunetLaboratoire d'Ingénierie des Systèmes Macromoléculaires, CNRS-UPR 9027, Institut de Microbiologie de la Méditerranée, Aix-Marseille Université, Marseille, France.
Christophe S Bernard
Marthe Gavioli
Roland Lloubès
Eric Cascales

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Type VI secretion systems (T6SS) are macromolecular machines of the cell envelope of Gram-negative bacteria responsible for bacterial killing and/or virulence towards different host cells. Here, we characterized the regulatory mechanism underlying expression of the enteroagregative Escherichia coli sci1 T6SS gene cluster. We identified Fur as the main regulator of the sci1 cluster. A detailed analysis of the promoter region showed the presence of three GATC motifs, which are target of the DNA adenine methylase Dam. Using a combination of reporter fusion, gel shift, and in vivo and in vitro Dam methylation assays, we dissected the regulatory role of Fur and Dam-dependent methylation. We showed that the sci1 gene cluster expression is under the control of an epigenetic switch depending on methylation: fur binding prevents methylation of a GATC motif, whereas methylation at this specific site decreases the affinity of Fur for its binding box. A model is proposed in which the sci1 promoter is regulated by iron availability, adenine methylation, and DNA replication.

Indexed as

Epigenesis, GeneticGene Expression Regulation, BacterialMultigene FamilyBacterial ProteinsBacterial Secretion SystemsBase SequenceBinding SitesConsensus SequenceDNA MethylationDNA Transposable ElementsEscherichia coliGenes, BacterialModels, BiologicalMolecular Sequence DataMutagenesis, Site-DirectedPromoter Regions, GeneticBacterial ProteinsBacterial Secretion SystemsDNA Transposable Elementsferric uptake regulating proteins, bacterialRepressor Proteins

Identifiers

PMID21829382
PMCPMC3145626

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.