Evidence map›Paper›PMID 21828055›Full record

ArticleThe Journal of biological chemistry2011

Novel C-terminal motif within Sec7 domain of guanine nucleotide exchange factors regulates ADP-ribosylation factor (ARF) binding and activation.

Jason Lowery, Tomasz Szul, Jayaraman Seetharaman, Xiaoying Jian, Min Su, Farhad Forouhar, Rong Xiao, Thomas B Acton, Gaetano T Montelione, Helen Lin and 6 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 2 countries.

Jason LoweryDepartment of Cell Biology, University of Alabama, Birmingham, Alabama 35294, USA.
Tomasz Szul
Jayaraman Seetharaman
Xiaoying Jian
Min Su
Farhad Forouhar
Rong Xiao
Thomas B Acton
Gaetano T Montelione
Helen Lin
John W Wright
Eunjoo Lee
Zoe G Holloway
Paul A Randazzo
Liang Tong
Elizabeth Sztul
University of Alabama at Birmingham · USNew York Structural Biology Center · USRutgers, The State University of New Jersey · USNational Institutes of Health · USCentre for Human Genetics · GBColumbia University · US

Funding

Sub-project 9U54GM074958 · NIGMS · RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK · PI KENNEDY, MICHAEL ALLEN · 2005 to 2009
$56.6M
University of Georgia ProjectU54GM094597 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI ROST, BURKHARD · 2010 to 2014
$36.9M
Regulation of ADP-ribosylation factorZIABC007365 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI RANDAZZO, PAUL A · 2009 to 2025
$27.9M
NIGMS NIH HHS U54 GM074958NIGMS NIH HHS U54 GM094597Wellcome Trust 090532
6 · The paper itself

Abstract

ADP-ribosylation factors (ARFs) and their activating guanine nucleotide exchange factors (GEFs) play key roles in membrane traffic and signaling. All ARF GEFs share a ∼200-residue Sec7 domain (Sec7d) that alone catalyzes the GDP to GTP exchange that activates ARF. We determined the crystal structure of human BIG2 Sec7d. A C-terminal loop immediately following helix J (loop>J) was predicted to form contacts with helix H and the switch I region of the cognate ARF, suggesting that loop>J may participate in the catalytic reaction. Indeed, we identified multiple alanine substitutions within loop>J of the full length and/or Sec7d of two large brefeldin A-sensitive GEFs (GBF1 and BIG2) and one small brefeldin A-resistant GEF (ARNO) that abrogated binding of ARF and a single alanine substitution that allowed ARF binding but inhibited GDP to GTP exchange. Loop>J sequences are highly conserved, suggesting that loop>J plays a crucial role in the catalytic activity of all ARF GEFs. Using GEF mutants unable to bind ARF, we showed that GEFs associate with membranes independently of ARF and catalyze ARF activation in vivo only when membrane-associated. Our structural, cell biological, and biochemical findings identify loop>J as a key regulatory motif essential for ARF binding and GDP to GTP exchange by GEFs and provide evidence for the requirement of membrane association during GEF activity.

Indexed as

ADP-Ribosylation FactorsAmino Acid MotifsAmino Acid SubstitutionCatalysisGTPase-Activating ProteinsGuanine Nucleotide Exchange FactorsGuanosine DiphosphateGuanosine TriphosphateHeLa CellsHumansMutation, MissenseProtein Structure, TertiaryADP-Ribosylation FactorsARFGEF2 protein, humancytohesin-2GBF1 protein, humanGTPase-Activating ProteinsGuanine Nucleotide Exchange FactorsGuanosine DiphosphateGuanosine Triphosphate

Identifiers

PMID21828055
PMCPMC3196086
OpenAlexW2092897825

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.