Evidence map›Paper›PMID 21827954›Full record

ArticleStructure (London, England : 1993)2011

Flexible architecture of IP3R1 by Cryo-EM.

Steven J Ludtke, Thao P Tran, Que T Ngo, Vera Yu Moiseenkova-Bell, Wah Chiu, Irina I Serysheva

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
10.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 80 citations in OpenAlex.

  1. Understanding IPCell calcium · 2023
    Review
  2. Article
  3. Functional determination of calcium-binding sites required for the activation of inositol 1,4,5-trisphosphate receptors.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  4. Article
  5. Review
  6. Review
  7. Cryo-EM structure of type 1 IPCommunications biology · 2021
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. PLC and IPThe Journal of general physiology · 2018
    Article
  13. Review
  14. Article
  15. Single-particle cryo-EM-Improved ab initio 3D reconstruction with SIMPLE/PRIME.Protein science : a publication of the Protein Society · 2018
    Article
  16. IPCellular and molecular life sciences : CMLS · 2017
    Review
  17. Structure of IPCurrent opinion in structural biology · 2017
    Review
  18. IPProceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Steven J LudtkeNational Center for Macromolecular Imaging, Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, TX 77030, USA.
Thao P Tran
Que T Ngo
Vera Yu Moiseenkova-Bell
Wah Chiu
Irina I Serysheva
Baylor College of Medicine · US

Funding

ZERNIKE PHASE PLATE CRYOEM IN OKAZAKIP41RR002250 · NCRR · UNIVERSITY OF ARIZONA · PI CHIU, WAH · 1985 to 2011
$22.1M
SUPPORT AND DEVELOPMENT OF EMAN FOR ELECTRON MICROSCOPY IMAGE PROCESSINGR01GM080139 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI LUDTKE, STEVEN J · 2006 to 2022
$5.4M
Structure-Function Studies Of IP3R ChannelsR01GM072804 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI SERYSHEVA, IRINA I · 2005 to 2023
$4.8M
NCRR NIH HHS P41 RR002250NCRR NIH HHS P41RR002250NIGMS NIH HHS R01 GM072804NIGMS NIH HHS R01GM072804NIGMS NIH HHS R01 GM080139NIGMS NIH HHS R01GM080139PHS HHS RGM072804Z
6 · The paper itself

Abstract

Inositol 1,4,5-trisphosphate receptors (IP3Rs) play a fundamental role in generating Ca2+ signals that trigger many cellular processes in virtually all eukaryotic cells. Thus far, the three-dimensional (3D) structure of these channels has remained extremely controversial. Here, we report a subnanometer resolution electron cryomicroscopy (cryo-EM) structure of a fully functional type 1 IP3R from cerebellum in the closed state. The transmembrane region reveals a twisted bundle of four α helices, one from each subunit, that form a funnel shaped structure around the 4-fold symmetry axis, strikingly similar to the ion-conduction pore of K+ channels. The lumenal face of IP3R1 has prominent densities that surround the pore entrance and similar to the highly structured turrets of Kir channels. 3D statistical analysis of the cryo-EM density map identifies high variance in the cytoplasmic region. This structural variation could be attributed to genuine structural flexibility of IP3R1.

Indexed as

Cryoelectron MicroscopyAnimalsCalciumCerebellumInositol 1,4,5-Trisphosphate ReceptorsInositol PhosphatesLiposomesProtein Structure, QuaternaryProtein Structure, SecondaryProtein Structure, TertiaryRatsSurface PropertiesCalciumInositol 1,4,5-Trisphosphate ReceptorsInositol PhosphatesLiposomes

Identifiers

PMID21827954
PMCPMC3154621
OpenAlexW2030416915

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.