Evidence map›Paper›PMID 21826412›Full record

ArticleChromosoma2011

Formation of novel CENP-A domains on tandem repetitive DNA and across chromosome breakpoints on human chromosome 8q21 neocentromeres.

Dan Hasson, Alicia Alonso, Fanny Cheung, James H Tepperberg, Peter R Papenhausen, John J M Engelen, Peter E Warburton

Abstract read
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In one paragraph

Article in Chromosoma, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
5.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 51 citations in OpenAlex.

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  17. Transposable elements: genome innovation, chromosome diversity, and centromere conflict.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2018
    Review
  18. Article
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  20. Integrity of the human centromere DNA repeats is protected by CENP-A, CENP-C, and CENP-T.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Dan HassonDepartment of Genetics and Genomic Sciences, Mount Sinai School of Medicine, Icahn Medical Institute, NY 10029, USA.
Alicia Alonso
Fanny Cheung
James H Tepperberg
Peter R Papenhausen
John J M Engelen
Peter E Warburton
Icahn School of Medicine at Mount Sinai · USMount Sinai Hospital · USResearch Triangle Park Foundation · USMaastricht University Medical Centre · NL

Funding

ANALYSIS OF HUMAN CHROMOSOME 13Q NEOCENTROMERE FORMATIONR01GM061150 · NIGMS · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI WARBURTON, PETER E · 2000 to 2007
$1.7M
NIGMS NIH HHS R01 GM061150
6 · The paper itself

Abstract

Endogenous human centromeres form on megabase-sized arrays of tandemly repeated alpha satellite DNA. Human neocentromeres form epigenetically at ectopic sites devoid of alpha satellite DNA and permit analysis of centromeric DNA and chromatin organization. In this study, we present molecular cytogenetic and CENP-A chromatin immunoprecipitation (ChIP) on CHIP analyses of two neocentromeres that have formed in chromosome band 8q21 each with a unique DNA and CENP-A chromatin configuration. The first neocentromere was found on a neodicentric chromosome 8 with an inactivated endogenous centromere, where the centromeric activity and CENP-A domain were repositioned to band 8q21 on a large tandemly repeated DNA. This is the first example of a neocentromere forming on repetitive DNA, as all other mapped neocentromeres have formed on single copy DNA. Quantitative fluorescent in situ hybridization (FISH) analysis showed a 60% reduction in the alpha satellite array size at the inactive centromere compared to the active centromere on the normal chromosome 8. This neodicentric chromosome may provide insight into centromere inactivation and the role of tandem DNA in centromere structure. The second neocentromere was found on a neocentric ring chromosome that contained the 8q21 tandemly repeated DNA, although the neocentromere was localized to a different genomic region. Interestingly, this neocentromere is composed of two distinct CENP-A domains in bands 8q21 and 8q24, which are brought into closer proximity on the ring chromosome. This neocentromere suggests that chromosomal rearrangement and DNA breakage may be involved in neocentromere formation. These novel examples provide insight into the formation and structure of human neocentromeres.

Indexed as

Chromosome BreakpointsTandem Repeat SequencesAdultAutoantigensCentromereCentromere Protein AChildChromatin ImmunoprecipitationChromosomal Proteins, Non-HistoneChromosome BandingChromosomes, Human, Pair 8FemaleHumansMaleProtein BindingAutoantigensCENPA protein, humanCentromere Protein AChromosomal Proteins, Non-Histone

Identifiers

PMID21826412
OpenAlexW2044399950

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.