Evidence map›Paper›PMID 21825122›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

Structural and functional characterization of a single-chain peptide-MHC molecule that modulates both naive and activated CD8+ T cells.

Dibyendu Samanta, Gayatri Mukherjee, Udupi A Ramagopal, Rodolfo J Chaparro, Stanley G Nathenson, Teresa P DiLorenzo, Steven C Almo

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Methodology of stable peptide based on propargylated sulfonium.Biochemistry and biophysics reports · 2023
    Article
  6. Article
  7. Article
  8. Article
  9. MHC-restricted Ag85B-specific CD8European journal of immunology · 2019
    Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Review
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Dibyendu SamantaDepartment of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Gayatri Mukherjee
Udupi A Ramagopal
Rodolfo J Chaparro
Stanley G Nathenson
Teresa P DiLorenzo
Steven C Almo

Funding

WORD PROCESSORP30CA013330 · NCI · YESHIVA UNIVERSITY · PI STEVEN C. ALMO · 1985 to 2026
$111.2M
Stable Isotope and Metabolomics CoreP60DK020541 · NIDDK · YESHIVA UNIVERSITY · PI PESSIN, JEFFREY E. · 1986 to 2014
$29.8M
Translational Research CoreP30DK020541 · NIDDK · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI STREAMSON C CHUA · 2015 to 2026
$27.7M
Case Center for Synchrotron BiosciencesP30EB009998 · NIBIB · CASE WESTERN RESERVE UNIVERSITY · PI CHANCE, MARK R · 2009 to 2018
$8.4M
Molecular and Structural Basis for T Cell CostimulationR01AI007289 · NIAID · YESHIVA UNIVERSITY · PI NATHENSON, STANLEY G · 1985 to 2012
$7.7M
Antigens Recognized by CD8+ T Cells in Type 1 DiabetesR01DK064315 · NIDDK · YESHIVA UNIVERSITY · PI DILORENZO, TERESA P · 2003 to 2015
$3.8M
Molecular and Structural Basis for T Cell CostimulationR56AI007289 · NIAID · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI NATHENSON, STANLEY G · 2007 to 2007
$553k
BIOCHEMICAL STUDIES ON HISTOCOMPATIBILITY ANTIGENSR37AI007289 · NIAID · YESHIVA UNIVERSITY · PI NATHENSON, STANLEY G · 1987 to 1996
–
NCI NIH HHS CA013330NCI NIH HHS P30 CA013330NIAID NIH HHS AI007289NIAID NIH HHS R01 AI007289NIAID NIH HHS R56 AI007289NIBIB NIH HHS P30 EB009998NIDDK NIH HHS DK020541NIDDK NIH HHS DK064315NIDDK NIH HHS P30 DK020541NIDDK NIH HHS P60 DK020541NIDDK NIH HHS R01 DK064315
6 · The paper itself

Abstract

Peptide-MHC (pMHC) multimers, in addition to being tools for tracking and quantifying antigen-specific T cells, can mediate downstream signaling after T-cell receptor engagement. In the absence of costimulation, this can lead to anergy or apoptosis of cognate T cells, a property that could be exploited in the setting of autoimmune disease. Most studies with class I pMHC multimers used noncovalently linked peptides, which can allow unwanted CD8(+) T-cell activation as a result of peptide transfer to cellular MHC molecules. To circumvent this problem, and given the role of self-reactive CD8(+) T cells in the development of type 1 diabetes, we designed a single-chain pMHC complex (scK(d).IGRP) by using the class I MHC molecule H-2K(d) and a covalently linked peptide derived from islet-specific glucose-6-phosphatase catalytic subunit-related protein (IGRP(206-214)), a well established autoantigen in NOD mice. X-ray diffraction studies revealed that the peptide is presented in the groove of the MHC molecule in canonical fashion, and it was also demonstrated that scK(d).IGRP tetramers bound specifically to cognate CD8(+) T cells. Tetramer binding induced death of naive T cells and in vitro- and in vivo-differentiated cytotoxic T lymphocytes, and tetramer-treated cytotoxic T lymphocytes showed a diminished IFN-γ response to antigen stimulation. Tetramer accessibility to disease-relevant T cells in vivo was also demonstrated. Our study suggests the potential of single-chain pMHC tetramers as possible therapeutic agents in autoimmune disease. Their ability to affect the fate of naive and activated CD8(+) T cells makes them a potential intervention strategy in early and late stages of disease.

Indexed as

AnimalsAutoantigensAutoimmune DiseasesCD8-Positive T-LymphocytesCell DeathDiabetes Mellitus, Type 1Glucose-6-PhosphataseHistocompatibility AntigensLymphocyte ActivationMiceMice, Inbred NODMice, TransgenicPeptide FragmentsProtein MultimerizationAutoantigensGlucose-6-PhosphataseHistocompatibility AntigensPeptide Fragments

Identifiers

PMID21825122
PMCPMC3158197

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.