Evidence map›Paper›PMID 21822172›Full record

ArticleTransplantation2011

Signal joint T-cell receptor excision circle assay in miniature swine.

Prashanth Vallabhajosyula, Aseda Tena, Kazuhiko Yamada, David H Sachs

Open access · greenAbstract read
In one paragraph

Article in Transplantation, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact, top 87% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Reconstitution of thymopoiesis via implantation of cryopreserved cultured thymus tissue into athymic recipients.American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2026
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Prashanth VallabhajosyulaTransplantation Biology Research Center, Massachusetts General Hospital, Boston, MA 02129, USA.
Aseda Tena
Kazuhiko Yamada
David H Sachs
Massachusetts General Hospital · US

Funding

XENOGRAFT TOLERANCE THROUGH MIXED CHIMERISMP01AI045897 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI Megan Sykes · 2000 to 2026
$71.9M
TOLERANCE TO VASCULARIZED ALLOGRAFTS IN MINISWINER37AI031046 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI SACHS, DAVID H · 2006 to 2015
$7.3M
Thymic Rejuvenation for the Induction of Transplantation ToleranceR01AI086134 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI SACHS, DAVID H, YAMADA, KAZUHIKO · 2010 to 2014
$2.1M
Regulatory Cells Mediating Renal Allograft ToleranceF32AI066699 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI VALLABHAJOSYULA, PRASHANTH · 2005 to 2006
$116k
NIAID NIH HHS 5F32 AI066699-02NIAID NIH HHS F32 AI066699NIAID NIH HHS P01 AI045897NIAID NIH HHS R01 AI086134NIAID NIH HHS R37 AI031046
6 · The paper itself

Abstract

objectiveAssays for T cell receptor excision circles (TREC) have been utilized in human, primate, and mouse models as a measure of thymic activity, but no comparable assay has been described in artiodactyls. We describe the development of the porcine signal joint (sj) TREC assay, and provide a likely reason for previous difficulties in its identification in artiodactyls. DESIGN AND

methodsUtilizing the homology between the known genomic sequences in sjTREC in human and mouse, polymerase chain reaction (PCR) primers were derived for the putative porcine sjTREC. Primers from the ψJα side of the sjTREC were derived from the known porcine sequence.

resultsThe sjTREC in two artiodactyls, swine and sheep, was identified using forward primers from the ψJα region, and reverse primers from the putative δ-rec region. Unlike in the detection of primate TRECs, initially the use of similar primers close to the δ-rec failed to yield the sjTREC product. Marching about 800 basepairs into δ-rec, primers derived from a homology region between human and mouse led to the detection of sjTREC. Comparing sjTREC amongst the species revealed highest homology between the two artiodactyls. A quantitative PCR (QPCR) assay of porcine sjTREC was also developed.

conclusionIdentification and analysis of the sjTREC sequences in two artiodactyls suggested why previous attempts at cloning the pig TREC using known sjTREC sequences were unsuccessful. The development of the porcine signal joint TREC assay should enable a more direct quantification of thymic activity in porcine models of transplant biology.

Indexed as

AnimalsBase SequenceBiopsyDNA PrimersGenomicsHumansLeukocytes, MononuclearMiceMolecular Sequence DataPolymerase Chain ReactionReceptors, Antigen, T-CellSheepSpecies SpecificitySwineSwine, MiniatureThymus GlandDNA PrimersReceptors, Antigen, T-Cell

Identifiers

PMID21822172
PMCPMC3291197
OpenAlexW2056870896

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.