Evidence map›Paper›PMID 21821144›Full record

ArticleProstaglandins & other lipid mediators2012

Hematopoietic prostaglandin D synthase (HPGDS): a high stability, Val187Ile isoenzyme common among African Americans and its relationship to risk for colorectal cancer.

Brigette L Tippin, A Joan Levine, Alicia M Materi, Wen-Liang Song, Temitope O Keku, Julie E Goodman, Leah B Sansbury, Sudipto Das, Aihua Dai, Alan M Kwong and 15 more

Abstract read
In one paragraph

Article in Prostaglandins & other lipid mediators, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
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  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 9 institutions in 2 countries.

Brigette L TippinDivision of Medical Genetics, Harbor-UCLA Medical Center and Los Angeles Biomedical Research Institute, Torrance, CA, USA.
A Joan Levine
Alicia M Materi
Wen-Liang Song
Temitope O Keku
Julie E Goodman
Leah B Sansbury
Sudipto Das
Aihua Dai
Alan M Kwong
Amy M Lin
John M Lin
Jae Man Park
Ruth E Patterson
Rowan T Chlebowski
R Michael Garavito
Tsuyoshi Inoue
Wonhwa Cho
John A Lawson
Shiv Kapoor
Laurence N Kolonel
Loïc Le Marchand
Robert W Haile
Robert S Sandler
Henry J Lin
University of California, Los Angeles · USSouthern California University for Professional Studies · USUniversity of Hawaiʻi at Mānoa · USUniversity of Illinois Chicago · USMichigan State University · USNational Institutes of Health · USOsaka University · JPPediatrics and Genetics · USUniversity of California, San Diego · US

Funding

ZONA-FREE HAMSTER OVA ASSAY AS AN INDICATOR OF MALE FERTILITYM01RR000425 · NCRR · LUNDQUIST INSTITUTE FOR BIOMEDICAL INNOVATION AT HARBOR-UCLA MEDICAL CENTER · PI WANG, CHRISTINA C. · 1985 to 2011
$74.2M
University of Hawaii Cancer Center CCSGP30CA071789 · NCI · UNIVERSITY OF HAWAII AT MANOA · PI Xin Chen · 1996 to 2026
$56.2M
UNC-CH CENTER FOR ENVIRONMENTAL HEALTH &SUSCEPTIBILITYP30ES010126 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Stephanie Engel · 2001 to 2026
$36.3M
Multiethnic Cohort Study of Diet and CancerR37CA054281 · NCI · UNIVERSITY OF HAWAII AT MANOA · PI KOLONEL, LAURENCE N. · 2003 to 2012
$23.2M
RISK FACTORS FOR COLON ADENOMASR01CA044684 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SANDLER, ROBERT S. · 1988 to 2010
$4.6M
MULTIETHNIC/MINORITY COHORT STUDY OF DIET AND CANCERR01CA054281 · NCI · UNIVERSITY OF HAWAII AT MANOA · PI KOLONEL, LAURENCE N. · 1993 to 2002
$4.5M
GENES, ANTICARINOGENS AND COLON NEOPLASMSR01CA073403 · NCI · LUNDQUIST INSTITUTE FOR BIOMEDICAL INNOVATION AT HARBOR-UCLA MEDICAL CENTER · PI LIN, HENRY J · 1996 to 2006
$1.3M
PROSTAGLANDINS AND COLON ADENOMASR03CA091179 · NCI · LA BIOMED RES INST/ HARBOR UCLA MED CTR · PI LIN, HENRY J · 2001 to 2002
$136k
SIGMOIDOSCOPY-BASED CASE CONTROL STUDY OF POLYPSR01CA051923 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI HAILE, ROBERT WILLIAM · 1991 to 1998
–
GENE ENVIRONMENT INTERACTIONS IN COLORECTAL POLYPSR01CA066794 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI HAILE, ROBERT WILLIAM · 1994 to 1998
–
NCI NIH HHS CA44684NCI NIH HHS CA51923NCI NIH HHS CA54281NCI NIH HHS CA66794NCI NIH HHS CA73403NCI NIH HHS CA91179NCI NIH HHS P30 CA071789NCI NIH HHS R01 CA044684NCI NIH HHS R01 CA054281NCI NIH HHS R01 CA073403NCI NIH HHS R03 CA091179NCI NIH HHS R37 CA054281NCRR NIH HHS M01 RR000425NCRR NIH HHS M01 RR00425NIEHS NIH HHS P30 ES010126
6 · The paper itself

Abstract

Intestinal tumors in Apc(Min/+) mice are suppressed by over-production of HPGDS, which is a glutathione transferase that forms prostaglandin D(2) (PGD(2)). We characterized naturally occurring HPGDS isoenzymes, to see if HPGDS variation is associated with human colorectal cancer risk. We used DNA heteroduplex analysis and sequencing to identify HPGDS variants among healthy individuals. HPGDS isoenzymes were produced in bacteria, and their catalytic activities were tested. To determine in vivo effects, we conducted pooled case-control analyses to assess whether there is an association of the isoenzyme with colorectal cancer. Roughly 8% of African Americans and 2% of Caucasians had a highly stable Val187lle isoenzyme (with isoleucine instead of valine at position 187). At 37°C, the wild-type enzyme lost 15% of its activity in 1h, whereas the Val187Ile form remained >95% active. At 50°C, the half life of native HPGDS was 9min, compared to 42 min for Val187Ile. The odds ratio for colorectal cancer among African Americans with Val187Ile was 1.10 (95% CI, 0.75-1.62; 533 cases, 795 controls). Thus, the Val187Ile HPGDS isoenzyme common among African Americans is not associated with colorectal cancer risk. Other approaches will be needed to establish a role for HPGDS in occurrence of human intestinal tumors, as indicated by a mouse model.

Indexed as

Amino Acid SubstitutionAdultAnimalsBlack or African AmericanCase-Control StudiesColorectal NeoplasmsEnzyme StabilityGene Knockout TechniquesGenetic Predisposition to DiseaseHumansIntramolecular OxidoreductasesIsoenzymesLipocalinsMiceModels, MolecularProtein ConformationIntramolecular OxidoreductasesIsoenzymesLipocalinsprostaglandin R2 D-isomerase

Identifiers

PMID21821144
PMCPMC3226866
OpenAlexW2023938716

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.