Evidence map›Paper›PMID 21820179›Full record

ArticleMolecular immunology2011

Zebrafish immunoglobulin IgD: unusual exon usage and quantitative expression profiles with IgM and IgZ/T heavy chain isotypes.

Anastasia M Zimmerman, Farah M Moustafa, Kryzstof E Romanowski, Lisa A Steiner

Abstract read
In one paragraph

Article in Molecular immunology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 75 citations in OpenAlex.

  1. Article
  2. Review
  3. Small Fish, Big Answers: Zebrafish and the Molecular Drivers of Metastasis.International journal of molecular sciences · 2025
    Review
  4. Zebrafish (International journal of molecular sciences · 2024
    Review
  5. Article
  6. Review
  7. Article
  8. Teleost Fish as an Experimental Model for Vaccine Development.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  9. Article
  10. Mucosal immunoglobulins of teleost fish: A decade of advances.Developmental and comparative immunology · 2021
    Review
  11. Review
  12. Immunoglobulins in teleosts.Immunogenetics · 2021
    Review
  13. Tipping the Scales With Zebrafish to Understand Adaptive Tumor Immunity.Frontiers in cell and developmental biology · 2021
    Review
  14. Article
  15. Article
  16. Article
  17. Fish Immunoglobulins.Biology · 2016
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Anastasia M ZimmermanDepartment of Biology, College of Charleston, 66 George Street, Charleston, SC 29424, USA. zimmermana@cofc.edu
Farah M Moustafa
Kryzstof E Romanowski
Lisa A Steiner
College of Charleston · USMassachusetts Institute of Technology · US

Funding

Supplement for South Carolina BRIN - 1P20 RR16461P20RR016461 · NCRR · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI DEAVOR, JAMES · 2001 to 2011
$32.3M
STRUCTURE AND DIVERSITY IN THE IMMUNE SYSTEMR01AI008054 · NIAID · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI STEINER, LISA A · 1985 to 2004
$1.7M
Howard Hughes Medical InstituteNCRR NIH HHS P20 RR-016461NCRR NIH HHS P20 RR016461NIAID NIH HHS R01 AI008054
6 · The paper itself

Abstract

The zebrafish is an emerging model for comparative immunology and biomedical research. In contrast to the five heavy chain isotype system of mice and human (IgD, IgM, IgA, IgG, IgE), zebrafish harbor gene segments for IgD, IgM, and novel heavy chain isotype called IgZ/T which appears restricted to bony fishes. The purpose of this study was to design and validate a suite of quantitative real time RT-PCR protocols to measure IgH expression in a vertebrate model which has considerable promise for modeling both pathogenic infection and chronic conditions leading to immune dysfunction. Specific primers were designed and following verification of their specificty, relative expression levels of IgD, IgM, and IgZ/T were measured in triplicate for zebrafish raised under standard laboratory conditions. During embryonic stages, low levels of each heavy chain isotype (IgH) were detected with each increasing steadily between 2 and 17 weeks post fertilization. Overall IgM>IgZ>IgD throughout zebrafish development with the copy number of IgM being several fold higher than that of IgD or IgZ/T. IgD exon usage was also characterized, as its extremely long size and presence of a stop codon in the second IgD exon in zebrafish, raised questions as to how this antibody might be expressed. Zebrafish IgD was found to be a chimeric immunoglobulin, with the third IgD exon spliced to the first IgM constant exon thereby circumventing the first and second IgD exons. Collectively, the qRT-PCR results represent the first comparative profile of IgD, IgM, IgZ/T expression over the lifespan of any fish species and the primers and assay parameters reported should prove useful in enabling researchers to rapidly quantify changes in IgH expression in zebrafish models of disease where altered IgH expression is manifested.

Indexed as

Gene Expression ProfilingAnimalsExonsGene ExpressionGene Rearrangement, B-LymphocyteImmunoglobulin DImmunoglobulin Heavy ChainsImmunoglobulin IsotypesImmunoglobulin MReverse Transcriptase Polymerase Chain ReactionRNA SplicingZebrafishImmunoglobulin DImmunoglobulin Heavy ChainsImmunoglobulin IsotypesImmunoglobulin M

Identifiers

PMID21820179
PMCPMC3163713
OpenAlexW2155741538

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.