Evidence map›Paper›PMID 21818549›Full record

ArticleBiomolecular NMR assignments2012

¹H, ¹³C and ¹⁵N chemical shift assignments for the human Pitx2 homeodomain in complex with a 22-base hairpin DNA.

Thomas Doerdelmann, Douglas J Kojetin, Jamie M Baird-Titus, Mark Rance

Abstract read
In one paragraph

Article in Biomolecular NMR assignments, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 93% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Thomas DoerdelmannDepartment of Molecular Genetics, Biochemistry and Microbiology, University of Cincinnati, 231 Albert Sabin Way, Cincinnati, OH 45267, USA.
Douglas J Kojetin
Jamie M Baird-Titus
Mark Rance
University of Cincinnati · USMount St. Joseph University · USSabin Vaccine Institute · US

Funding

ENVIRONMETAL CARCINOGENESIS AND MUTAGENESIST32ES007250 · NIEHS · UNIVERSITY OF CINCINNATI · PI MILLER, WILLIAM E · 1988 to 2024
$11.9M
TRAINING IN CARDIOVASCULAR BIOLOGYT32HL007382 · NHLBI · UNIVERSITY OF CINCINNATI · PI SCHWARTZ, ARNOLD · 1985 to 2012
$5.9M
Protein Dynamics in Homeodomain/DNA ComplexesR01GM063855 · NIGMS · UNIVERSITY OF CINCINNATI · PI RANCE, MARK A · 2003 to 2012
$2.6M
Training in Biologic Threat AgentsT32AI055406 · NIAID · UNIVERSITY OF CINCINNATI · PI WEISS, ALISON A. · 2003 to 2007
$1.5M
800 MHz NMR console replacementS10RR027755 · NCRR · UNIVERSITY OF CINCINNATI · PI RANCE, MARK A · 2010 to 2010
$358k
CRYOPROBE FOR 800 MHZ NMR SPECT: STRUC BIOL: BACTERIAL PROTEINS, CARDIAC MUSCLE S10RR019077 · NCRR · UNIVERSITY OF CINCINNATI · PI RANCE, MARK A · 2004 to 2004
$345k
NCRR NIH HHS RR027755NCRR NIH HHS RR19077NCRR NIH HHS S10 RR019077NCRR NIH HHS S10 RR027755NHLBI NIH HHS HL007382NHLBI NIH HHS T32 HL007382NIAID NIH HHS AI055406NIAID NIH HHS T32 AI055406NIEHS NIH HHS ES007250NIEHS NIH HHS T32 ES007250NIGMS NIH HHS GM063855NIGMS NIH HHS R01 GM063855
6 · The paper itself

Abstract

As one of the most important eukaryotic DNA-binding motifs, the homeodomain has been identified in over one thousand proteins. Transcription factors containing homeodomains play critical roles in diverse biological processes and are often implicated in human genetic disorders. The human Pitx2 protein is a central downstream transcription factor in both the TGF-β and Wnt/β-catenin signaling pathways, and involved in the regulation of cell differentiation, cell pattern formation and tissue maintenance. To better understand how Pitx2 regulates its target genes, we are investigating the mechanisms that confer DNA-binding specificity on its homeodomain. Here, we report complete (1)H, (13)C and (15)N protein chemical shift assignments of the human Pitx2 homeodomain in complex with a non-consensus DNA sequence.

Indexed as

Inverted Repeat SequencesNuclear Magnetic Resonance, BiomolecularBase SequenceDNAHomeobox Protein PITX2Homeodomain ProteinsHumansProtein BindingProtein Structure, TertiarySubstrate SpecificityTranscription FactorsDNAHomeobox Protein PITX2Homeodomain ProteinsTranscription Factors

Identifiers

PMID21818549
PMCPMC3264750
OpenAlexW1979794037

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.