Evidence map›Paper›PMID 21818368›Full record

ArticlePloS one2011

Native-state stability determines the extent of degradation relative to secretion of protein variants from Pichia pastoris.

Graham Whyteside, Marcos J C Alcocer, Janet R Kumita, Christopher M Dobson, Maria Lazarou, Richard J Pleass, David B Archer

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 52 citations in OpenAlex.

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  11. Efficient Heterologous Production ofInternational journal of molecular sciences · 2018
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  20. Biomarkers to evaluate the effects of temperature and methanol on recombinant Pichia pastoris.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Graham WhytesideSchool of Biology, University of Nottingham, Nottingham, United Kingdom.
Marcos J C Alcocer
Janet R Kumita
Christopher M Dobson
Maria Lazarou
Richard J Pleass
David B Archer
University of Nottingham · GBUniversity of Cambridge · GB

Funding

Biotechnology and Biological Sciences Research Council BB/E019927/1Biotechnology and Biological Sciences Research Council BB/F004389/1Biotechnology and Biological Sciences Research Council BB/H003843/1
6 · The paper itself

Abstract

We have investigated the relationship between the stability and secreted yield of a series of mutational variants of human lysozyme (HuL) in Pichia pastoris. We show that genes directly involved in the unfolded protein response (UPR), ER-associated degradation (ERAD) and ER-phagy are transcriptionally up-regulated more quickly and to higher levels in response to expression of more highly-destabilised HuL variants and those variants are secreted to lower yield. We also show that the less stable variants are retained within the cell and may also be targeted for degradation. To explore the relationship between stability and secretion further, two different single-chain-variable-fragment (scFv) antibodies were also expressed in P. pastoris, but only one of the scFvs gave rise to secreted protein. The non-secreted scFv was detected within the cell and the UPR indicators were pronounced, as they were for the poorly-secreted HuL variants. The non-secreted scFv was modified by changing either the framework regions or the linker to improve the predicted stability of the scFv and secretion was then achieved and the levels of UPR indicators were lowered Our data support the hypothesis that less stable proteins are targeted for degradation over secretion and that this accounts for the decrease in the yields observed. We discuss the secretion of proteins in relation to lysozyme amyloidosis, in particular, and optimised protein secretion, in general.

Indexed as

Endoplasmic Reticulum-Associated DegradationAutophagyEnzyme-Linked Immunosorbent AssayFungal ProteinsGene Expression Regulation, FungalHumansIntracellular SpaceMuramidaseMutant ProteinsPichiaProtein StabilityRNA, MessengerSingle-Chain AntibodiesUnfolded Protein ResponseFungal ProteinsMuramidaseMutant ProteinsRNA, MessengerSingle-Chain Antibodies

Identifiers

PMID21818368
PMCPMC3144928
OpenAlexW2169498742

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.