Evidence map›Paper›PMID 21818293›Full record

ArticlePloS one2011

A resource for discovering specific and universal biomarkers for distributed stem cells.

Minsoo Noh, Janet L Smith, Yang Hoon Huh, James L Sherley

Abstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Structure and function of LGR5: an enigmatic G-protein coupled receptor marking stem cells.Protein science : a publication of the Protein Society · 2014
    Review
  6. Higher 5-hydroxymethylcytosine identifies immortal DNA strand chromosomes in asymmetrically self-renewing distributed stem cells.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  7. Journal of stem cell research & therapy · 2013
    Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Minsoo NohSchool of Pharmacy, Ajou University, Suwon, South Korea.
Janet L Smith
Yang Hoon Huh
James L Sherley

Funding

Molecular and Genomic Imaging CenterP50HG003170 · NHGRI · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI CHURCH, GEORGE M · 2004 to 2009
$11.5M
NIH Director's Pioneer AwardDP1OD000805 · OD · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI SHERLEY, JAMES L · 2006 to 2010
$4.9M
NHGRI NIH HHS P50 HG003170NHGRI NIH HHS PSO HG 003170NIH HHS 5DP1OD000805NIH HHS DP1 OD000805PHS HHS NIEHS 689471
6 · The paper itself

Abstract

Specific and universal biomarkers for distributed stem cells (DSCs) have been elusive. A major barrier to discovery of such ideal DSC biomarkers is difficulty in obtaining DSCs in sufficient quantity and purity. To solve this problem, we used cell lines genetically engineered for conditional asymmetric self-renewal, the defining DSC property. In gene microarray analyses, we identified 85 genes whose expression is tightly asymmetric self-renewal associated (ASRA). The ASRA gene signature prescribed DSCs to undergo asymmetric self-renewal to a greater extent than committed progenitor cells, embryonic stem cells, or induced pluripotent stem cells. This delineation has several significant implications. These include: 1) providing experimental evidence that DSCs in vivo undergo asymmetric self-renewal as individual cells; 2) providing an explanation why earlier attempts to define a common gene expression signature for DSCs were unsuccessful; and 3) predicting that some ASRA proteins may be ideal biomarkers for DSCs. Indeed, two ASRA proteins, CXCR6 and BTG2, and two other related self-renewal pattern associated (SRPA) proteins identified in this gene resource, LGR5 and H2A.Z, display unique asymmetric patterns of expression that have a high potential for universal and specific DSC identification.

Indexed as

AnimalsBiological AssayBiomarkersCell LineCell ProliferationComputational BiologyCytochalasin DGene Expression ProfilingGenetic EngineeringMiceModels, StatisticalProteinsStem CellsTumor Suppressor Protein p53BiomarkersCytochalasin DProteinsTumor Suppressor Protein p53

Identifiers

PMID21818293
PMCPMC3139609

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.