Evidence map›Paper›PMID 21818281›Full record

ArticlePloS one2011

Analysis of al-2 mutations in Neurospora.

Violeta Díaz-Sánchez, Alejandro F Estrada, Danika Trautmann, M Carmen Limón, Salim Al-Babili, Javier Avalos

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.1field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Genetic Engineering of the Rock InhabitantFrontiers in fungal biology · 2022
    Article
  3. Review
  4. Article
  5. Article
  6. Disruption of a horizontally transferred phytoene desaturase abolishes carotenoid accumulation and diapause inProceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  7. Carotenoid Biosynthesis in Fusarium.Journal of fungi (Basel, Switzerland) · 2017
    Review
  8. Article
  9. Review
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Violeta Díaz-SánchezDepartment of Genetics, Faculty of Biology, University of Seville, Seville, Spain.
Alejandro F Estrada
Danika Trautmann
M Carmen Limón
Salim Al-Babili
Javier Avalos
Universidad de Sevilla · ESUniversity of Freiburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The orange pigmentation of the fungus Neurospora crassa is due to the accumulation of the xanthophyll neurosporaxanthin and precursor carotenoids. Two key reactions in the synthesis of these pigments, the formation of phytoene from geranylgeranyl pyrophosphate and the introduction of β cycles in desaturated carotenoid products, are catalyzed by two domains of a bifunctional protein, encoded by the gene al-2. We have determined the sequence of nine al-2 mutant alleles and analyzed the carotenoid content in the corresponding strains. One of the mutants is reddish and it is mutated in the cyclase domain of the protein, and the remaining eight mutants are albino and harbor different mutations on the phytoene synthase (PS) domain. Some of the mutations are expected to produce truncated polypeptides. A strain lacking most of the PS domain contained trace amounts of a carotenoid-like pigment, tentatively identified as the squalene desaturation product diapolycopene. In support, trace amounts of this compound were also found in a knock-out mutant for gene al-2, but not in that for gene al-1, coding for the carotene desaturase. The cyclase activity of the AL-2 enzyme from two albino mutants was investigated by heterologous expression in an appropriately engineered E. coli strain. One of the AL-2 enzymes, predictably with only 20% of the PS domain, showed full cyclase activity, suggesting functional independence of both domains. However, the second mutant showed no cyclase activity, indicating that some alterations in the phytoene synthase segment affect the cyclase domain. Expression experiments showed a diminished photoinduction of al-2 transcripts in the al-2 mutants compared to the wild type strain, suggesting a synergic effect between reduced expression and impaired enzymatic activities in the generation of their albino phenotypes.

Indexed as

Alkyl and Aryl TransferasesAllelesAmino Acid SequenceBiosynthetic PathwaysCarotenoidsEscherichia coliFungal ProteinsGene Expression Regulation, FungalGenes, FungalGeranylgeranyl-Diphosphate GeranylgeranyltransferaseLightLycopeneMolecular Sequence DataMutant ProteinsMutationNeurospora crassaAlkyl and Aryl TransferasesCarotenoidsFungal ProteinsGeranylgeranyl-Diphosphate GeranylgeranyltransferaseLycopeneMutant ProteinsPeptidesRNA, Messenger

Identifiers

PMID21818281
PMCPMC3139582
OpenAlexW2062120228

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.