ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2011
Extensive chromosome homoeology among Brassiceae species were revealed by comparative genetic mapping with high-density EST-based SNP markers in radish (Raphanus sativus L.).
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.
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27 citing papers in PubMed.
- Human-Mediated Dispersal Routes Structure Sahara Mustard Genomics.Molecular ecology · 2025Article
- Genome-Wide Identification, Expression, and Protein Analysis of CKX and IPT Gene Families in Radish (International journal of molecular sciences · 2024Article
- QTL mapping for Fusarium wilt resistance based on the whole-genome resequencing and their association with functional genes in Raphanus sativus.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- Global gene expression perturbations in rapeseed due to the introduction of alien radish chromosomes.Journal of genetics · 2021Article
- Transcriptome sequencing assisted discovery and computational analysis of novel SNPs associated with flowering inHorticulture research · 2019Article
- The radish genome database (RadishGD): an integrated information resource for radish genomics.Database : the journal of biological databases and curation · 2019Article
- Article
- Elucidating the triplicated ancestral genome structure of radish based on chromosome-level comparison with the Brassica genomes.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2016Article
- Quantitative Trait Loci for Morphological Traits and their Association with Functional Genes in Raphanus sativus.Frontiers in plant science · 2016Article
- Identification of Flowering-Related Genes Responsible for Differences in Bolting Time between Two Radish Inbred Lines.Frontiers in plant science · 2016Article
- Novel glucosinolate composition lacking 4-methylthio-3-butenyl glucosinolate in Japanese white radish (Raphanus sativus L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2015Article
- The radish genome and comprehensive gene expression profile of tuberous root formation and development.Scientific reports · 2015Article
- Construction of a reference genetic map of Raphanus sativus based on genotyping by whole-genome resequencing.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2015Article
- In vivo functional analysis of a nuclear restorer PPR protein.BMC plant biology · 2014Article
- Draft sequences of the radish (Raphanus sativus L.) genome.DNA research : an international journal for rapid publication of reports on genes and genomes · 2014Article
- Comparative analysis of the radish genome based on a conserved ortholog set (COS) of Brassica.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2014Article
- Article
- Comparative genomics of Brassicaceae crops.Breeding science · 2014Review
- A complex recombination pattern in the genome of allotetraploid Brassica napus as revealed by a high-density genetic map.PloS one · 2014Article
- Comprehensive analysis of expressed sequence tags from cultivated and wild radish (Raphanus spp.).BMC genomics · 2013Article
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10 authors.
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Abstract
A linkage map of expressed sequence tag (EST)-based markers in radish (Raphanus sativus L.) was constructed using a low-cost and high-efficiency single-nucleotide polymorphism (SNP) genotyping method named multiplex polymerase chain reaction-mixed probe dot-blot analysis developed in this study. Seven hundred and forty-six SNP markers derived from EST sequences of R. sativus were assigned to nine linkage groups with a total length of 806.7 cM. By BLASTN, 726 markers were found to have homologous genes in Arabidopsis thaliana, and 72 syntenic regions, which have great potential for utilizing genomic information of the model species A. thaliana in basic and applied genetics of R. sativus, were identified. By construction and analysis of the genome structures of R. sativus based on the 24 genomic blocks within the Brassicaceae ancestral karyotype, 23 of the 24 genomic blocks were detected in the genome of R. sativus, and half of them were found to be triplicated. Comparison of the genome structure of R. sativus with those of the A, B, and C genomes of Brassica species and that of Sinapis alba L. revealed extensive chromosome homoeology among Brassiceae species, which would facilitate transfer of the genomic information from one Brassiceae species to another.
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