Evidence map›Paper›PMID 21816819›Full record

ArticleThe Journal of biological chemistry2011

Insights into the molecular activation mechanism of the RhoA-specific guanine nucleotide exchange factor, PDZRhoGEF.

Jakub A Bielnicki, Alexander V Shkumatov, Urszula Derewenda, Avril V Somlyo, Dmitri I Svergun, Zygmunt S Derewenda

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 24 citations in OpenAlex.

  1. Characterization and computational simulation of human Syx, a RhoGEF implicated in glioblastoma.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2022
    Article
  2. Article
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  4. GαThe Journal of biological chemistry · 2020
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  10. Review
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  14. Structure of the Rho-specific guanine nucleotide-exchange factor Xpln.Acta crystallographica. Section F, Structural biology and crystallization communications · 2012
    Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Jakub A BielnickiDepartment of Molecular Physiology and Biological Physics University of Virginia, Charlottesville, Virginia 22908, USA.
Alexander V Shkumatov
Urszula Derewenda
Avril V Somlyo
Dmitri I Svergun
Zygmunt S Derewenda
University of Virginia · USEuropean Molecular Biology Laboratory · DE

Funding

Molecular Mechanisms of RhoA-mediated Ca2+Sensitization in Vascular Smooth MuscleR01GM086457 · NIGMS · UNIVERSITY OF VIRGINIA · PI DEREWENDA, URSZULA, DEREWENDA, ZYGMUNT S · 2009 to 2017
$5.4M
NIGMS NIH HHS R01 GM086457
6 · The paper itself

Abstract

PDZRhoGEF (PRG) belongs to a small family of RhoA-specific nucleotide exchange factors that mediates signaling through select G-protein-coupled receptors via Gα(12/13) and activates RhoA by catalyzing the exchange of GDP to GTP. PRG is a multidomain protein composed of PDZ, regulators of G-protein signaling-like (RGSL), Dbl-homology (DH), and pleckstrin-homology (PH) domains. It is autoinhibited in cytosol and is believed to undergo a conformational rearrangement and translocation to the membrane for full activation, although the molecular details of the regulation mechanism are not clear. It has been shown recently that the main autoregulatory elements of PDZRhoGEF, the autoinhibitory "activation box" and the "GEF switch," which is required for full activation, are located directly upstream of the catalytic DH domain and its RhoA binding surface, emphasizing the functional role of the RGSL-DH linker. Here, using a combination of biophysical and biochemical methods, we show that the mechanism of PRG regulation is yet more complex and may involve an additional autoinhibitory element in the form of a molten globule region within the linker between RGSL and DH domains. We propose a novel, two-tier model of autoinhibition where the activation box and the molten globule region act synergistically to impair the ability of RhoA to bind to the catalytic DH-PH tandem. The molten globule region and the activation box become less ordered in the PRG-RhoA complex and dissociate from the RhoA-binding site, which may constitute a critical step leading to PRG activation.

Indexed as

Amino Acid SequenceBinding SitesCircular DichroismGuanine Nucleotide Exchange FactorsHumansLightModels, StatisticalMolecular Sequence DataProtein ConformationProtein Structure, TertiaryrhoA GTP-Binding ProteinRho Guanine Nucleotide Exchange FactorsScattering, RadiationSequence Homology, Amino AcidUltraviolet RaysX-RaysARHGEF11 protein, humanGuanine Nucleotide Exchange FactorsrhoA GTP-Binding ProteinRho Guanine Nucleotide Exchange Factors

Identifiers

PMID21816819
PMCPMC3186380
OpenAlexW2135486974

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.