Evidence map›Paper›PMID 21815625›Full record

ArticleBiochemistry2011

Permeation of styryl dyes through nanometer-scale pores in membranes.

Yao Wu, Liang Ma, Stephen Cheley, Hagan Bayley, Qiang Cui, Edwin R Chapman

Abstract readComparative Study
In one paragraph

Article in Biochemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Synthetic cells in biomedical applications.Wiley interdisciplinary reviews. Nanomedicine and nanobiotechnology · 2022
    Review
  2. Pan-Drug ResistantAntibiotics (Basel, Switzerland) · 2020
    Article
  3. Review
  4. Review
  5. Engineered transmembrane pores.Current opinion in chemical biology · 2016
    Review
  6. Review
  7. Article
  8. Process of inducing pores in membranes by melittin.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  9. Properties of ribbon and non-ribbon release from rod photoreceptors revealed by visualizing individual synaptic vesicles.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2013
    Article
  10. Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Yao WuHoward Hughes Medical Institute and Department of Neuroscience, University of Wisconsin, Madison, Wisconsin 53706, United States.
Liang Ma
Stephen Cheley
Hagan Bayley
Qiang Cui
Edwin R Chapman

Funding

Synaptotagmin C2B Domain as a Ca2+ Sensing ModuleR01MH061876 · NIMH · UNIVERSITY OF WISCONSIN-MADISON · PI Edwin R Chapman · 2002 to 2026
$7.7M
Coupling between conformation and chemistry in enzymesR01GM071428 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI CUI, QIANG · 2005 to 2009
$976k
QM/MM analysis of redox driven proton pumpingR01GM084028 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI CUI, QIANG · 2009 to 2010
$550k
Howard Hughes Medical InstituteMedical Research Council G0300122NIGMS NIH HHS GM071428NIGMS NIH HHS GM084028NIGMS NIH HHS R01 GM071428NIGMS NIH HHS R01 GM084028NIMH NIH HHS MH 61876NIMH NIH HHS R01 MH061876
6 · The paper itself

Abstract

Styryl dyes are widely used to study synaptic vesicle (SV) recycling in neurons; vesicles are loaded with dye during endocytosis, and dye is subsequently released via exocytosis. During putative kiss-and-run exocytosis, efflux of dye from individual SVs has been proposed to occur via two sequential steps: dissociation from the membrane followed by permeation through a small fusion pore. To improve our understanding of the kinetics of efflux of dye from vesicles during kiss-and-run events, we examined the rates of efflux of different dyes through nanometer-scale pores formed in membranes by the toxins melittin and α-hemolysin; these pores approximate the size of fusion pores measured in neuroendocrine cells. We found that the axial diameter of each dye was a crucial determinant for permeation. Moreover, the two dyes with the largest cross-sectional areas were completely unable to pass through pores formed by a mutant α-hemolysin that has a slightly smaller pore than the wild-type toxin. The overall time constant for efflux (seconds) of each dye was orders of magnitude slower than the time constant for dissociation from membranes (milliseconds). Thus, the permeation step is rate-limiting, and this observation was further supported by atomistic molecular dynamics simulations. Together, the data reported here help provide a framework for interpreting dye destaining rates from secretory vesicles.

Indexed as

Bacterial ToxinsCell MembraneCell Membrane PermeabilityFluorescent DyesHemolysin ProteinsNanotechnologyNeurotoxinsPyridinium CompoundsQuaternary Ammonium CompoundsSynaptic VesiclesBacterial ToxinsFluorescent DyesFM1 43FM 1 84FM2 10Hemolysin ProteinsNeurotoxinsPyridinium CompoundsQuaternary Ammonium Compoundsstaphylococcal alpha-toxin

Identifiers

PMID21815625
PMCPMC3175815

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.