Evidence map›Paper›PMID 21814517›Full record

ArticlePLoS genetics2011

Genome-wide association study identifies HLA-DP as a susceptibility gene for pediatric asthma in Asian populations.

Emiko Noguchi, Hiromi Sakamoto, Tomomitsu Hirota, Kaori Ochiai, Yoshimasa Imoto, Masafumi Sakashita, Fumitake Kurosaka, Akira Akasawa, Shigemi Yoshihara, Noriko Kanno and 24 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers, 10 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed, 10 pooled it
10.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 10 syntheses or guidelines pooled it, 126 citations in OpenAlex.

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  5. A meta-analysis of IL-13 polymorphisms and pediatric asthma risk.Medical science monitor : international medical journal of experimental and clinical research · 2014
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  13. Genetics of chronic respiratory disease.Nature reviews. Genetics · 2024
    Review
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  16. Identification of key genes in allergic rhinitis by bioinformatics analysis.The Journal of international medical research · 2021
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4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

34 authors at 13 institutions in 2 countries.

Emiko NoguchiDepartment of Medical Genetics, Graduate School of Comprehensive Human Sciences, University of Tsukuba, Japan.
Hiromi Sakamoto
Tomomitsu Hirota
Kaori Ochiai
Yoshimasa Imoto
Masafumi Sakashita
Fumitake Kurosaka
Akira Akasawa
Shigemi Yoshihara
Noriko Kanno
Yumi Yamada
Naoki Shimojo
Yoichi Kohno
Yoichi Suzuki
Mi-Jin Kang
Ji-Won Kwon
Soo-Jong Hong
Ken Inoue
Yu-Ichi Goto
Fumio Yamashita
Takashi Asada
Hiroshi Hirose
Ikuo Saito
Shigeharu Fujieda
Nobuyuki Hizawa
Toru Sakamoto
Hironori Masuko
Yusuke Nakamura
Ichiro Nomura
Mayumi Tamari
Tadao Arinami
Teruhiko Yoshida
Hirohisa Saito
Kenji Matsumoto
University of Tsukuba · JPChiba University · JPDokkyo Medical University · JPNational Center For Child Health and Development · JPRIKEN Center for Integrative Medical Sciences · JPKeio University · JPNational Cancer Centre Japan · JPNational Center of Neurology and Psychiatry · JPUlsan College · KRUniversity of Fukui · JPKurosawa Hospital · JPTokyo Metropolitan Children's Medical Center · JPUniversity of Ulsan · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Asthma is a complex phenotype influenced by genetic and environmental factors. We conducted a genome-wide association study (GWAS) with 938 Japanese pediatric asthma patients and 2,376 controls. Single-nucleotide polymorphisms (SNPs) showing strong associations (P<1×10(-8)) in GWAS were further genotyped in an independent Japanese samples (818 cases and 1,032 controls) and in Korean samples (835 cases and 421 controls). SNP rs987870, located between HLA-DPA1 and HLA-DPB1, was consistently associated with pediatric asthma in 3 independent populations (P(combined) = 2.3×10(-10), odds ratio [OR] = 1.40). HLA-DP allele analysis showed that DPA1*0201 and DPB1*0901, which were in strong linkage disequilibrium, were strongly associated with pediatric asthma (DPA1*0201: P = 5.5×10(-10), OR = 1.52, and DPB1*0901: P = 2.0×10(-7), OR = 1.49). Our findings show that genetic variants in the HLA-DP locus are associated with the risk of pediatric asthma in Asian populations.

Indexed as

AdolescentAllelesAsian PeopleAsthmaCase-Control StudiesChildChild, PreschoolFemaleGene FrequencyGenetic Predisposition to DiseaseGenome-Wide Association StudyHaplotypesHLA-DP alpha-ChainsHLA-DP AntigensHLA-DP beta-ChainsHumansHLA-DPA1 antigenHLA-DP alpha-ChainsHLA-DP AntigensHLA-DPB1 antigenHLA-DP beta-Chains

Identifiers

PMID21814517
PMCPMC3140987
OpenAlexW2014240317

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.