Evidence map›Paper›PMID 21813647›Full record

ArticleThe Journal of biological chemistry2011

Crystal structure of Mycobacterium tuberculosis zinc-dependent metalloprotease-1 (Zmp1), a metalloprotease involved in pathogenicity.

Davide M Ferraris, Diego Sbardella, Agnese Petrera, Stefano Marini, Beat Amstutz, Massimo Coletta, Peter Sander, Menico Rizzi

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.3field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 40 citations in OpenAlex.

  1. Review
  2. Protein-Mediated Virulence in Mycobacterium tuberculosis.Advances in experimental medicine and biology · 2026
    Review
  3. A structure-basedFrontiers in immunology · 2024
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Opportunities for OvercomingInternational journal of molecular sciences · 2019
    Review
  9. Structures of soluble rabbit neprilysin complexed with phosphoramidon or thiorphan.Acta crystallographica. Section F, Structural biology communications · 2019
    Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Structure of gentlyase, the neutral metalloprotease of Paenibacillus polymyxa.Acta crystallographica. Section D, Biological crystallography · 2013
    Article
  18. WithdrawnInfectious disorders drug targets · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Davide M FerrarisDISCAFF Department of Chemical, Food, Pharmaceutical and Pharmacological Sciences, University of Piemonte Orientale A Avogadro, 28100 Novara, Italy.
Diego Sbardella
Agnese Petrera
Stefano Marini
Beat Amstutz
Massimo Coletta
Peter Sander
Menico Rizzi
Università degli Studi del Piemonte Orientale “Amedeo Avogadro” · ITUniversity of Zurich · CHConsorzio Interuniversitario Reattività Chimica e Catalisi · ITUniversity of Rome Tor Vergata · IT

Funding

Intramural NIH HHS
6 · The paper itself

Abstract

Mycobacterium tuberculosis, the causative agent of tuberculosis, parasitizes host macrophages. The resistance of the tubercle bacilli to the macrophage hostile environment relates to their ability to impair phagosome maturation and its fusion with the lysosome, thus preventing the formation of the phago-lysosome and eventually arresting the process of phagocytosis. The M. tuberculosis zinc-dependent metalloprotease Zmp1 has been proposed to play a key role in the process of phagosome maturation inhibition and emerged as an important player in pathogenesis. Here, we report the crystal structure of wild-type Zmp1 at 2.6 Å resolution in complex with the generic zinc metalloprotease inhibitor phosphoramidon, which we demonstrated to inhibit the enzyme potently. Our data represent the first structural characterization of a bacterial member of the zinc-dependent M13 endopeptidase family and revealed a significant degree of conservation with eukaryotic enzymes. However, structural comparison of the Zmp1-phosphoramidon complex with homologous human proteins neprilysin and endothelin-converting enzyme-1 revealed unique features of the Zmp1 active site to be exploited for the rational design of specific inhibitors that may prove useful as a pharmacological tool for better understanding Zmp1 biological function.

Indexed as

ZincBacterial ProteinsCrystallography, X-RayGlycopeptidesHumansMetalloproteasesMycobacterium tuberculosisStructural Homology, ProteinStructure-Activity RelationshipBacterial ProteinsGlycopeptidesMetalloproteasesphosphoramidonZincZmp1 protein, Mycobacterium tuberculosis

Identifiers

PMID21813647
PMCPMC3173161
OpenAlexW2012939880

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.