Evidence map›Paper›PMID 21808052›Full record

ArticleMolecular & cellular proteomics : MCP2011

The RNA-binding protein Rrm4 is essential for efficient secretion of endochitinase Cts1.

Janine Koepke, Florian Kaffarnik, Carl Haag, Kathi Zarnack, Nicholas M Luscombe, Julian König, Jernej Ule, Ronny Kellner, Dominik Begerow, Michael Feldbrügge

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
  2. Review
  3. Silencing a Chitinase Gene,International journal of molecular sciences · 2023
    Article
  4. Post-transcriptional control of fungal cell wall synthesis.Cell surface (Amsterdam, Netherlands) · 2022
    Article
  5. Review
  6. Review
  7. A Novel Potent Carrier for Unconventional Protein Export inFrontiers in cell and developmental biology · 2021
    Article
  8. Frontiers in microbiology · 2020
    Article
  9. Article
  10. Article
  11. Article
  12. A Potential Lock-Type Mechanism for Unconventional Secretion in Fungi.International journal of molecular sciences · 2019
    Review
  13. Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 2 countries.

Janine KoepkeHeinrich-Heine University Düsseldorf, Institute for Microbiology, Düsseldorf, Germany.
Florian Kaffarnik
Carl Haag
Kathi Zarnack
Nicholas M Luscombe
Julian König
Jernej Ule
Ronny Kellner
Dominik Begerow
Michael Feldbrügge
Heinrich Heine University Düsseldorf · DEMax Planck Institute for Terrestrial Microbiology · DERuhr University Bochum · DEEuropean Bioinformatics Institute · GBMedical Research Council · GBMRC Laboratory of Molecular Biology · GB

Funding

Medical Research Council MC_U105185858Wellcome Trust 089701
6 · The paper itself

Abstract

Long-distance transport of mRNAs is crucial in determining spatio-temporal gene expression in eukaryotes. The RNA-binding protein Rrm4 constitutes a key component of microtubule-dependent mRNA transport in filaments of Ustilago maydis. Although a number of potential target mRNAs could be identified, cellular processes that depend on Rrm4-mediated transport remain largely unknown. Here, we used differential proteomics to show that ribosomal, mitochondrial, and cell wall-remodeling proteins, including the bacterial-type endochitinase Cts1, are differentially regulated in rrm4Δ filaments. In vivo UV crosslinking and immunoprecipitation and fluorescence in situ hybridization revealed that cts1 mRNA represents a direct target of Rrm4. Filaments of cts1Δ mutants aggregate in liquid culture suggesting an altered cell surface. In wild type cells Cts1 localizes predominantly at the growth cone, whereas it accumulates at both poles in rrm4Δ filaments. The endochitinase is secreted and associates most likely with the cell wall of filaments. Secretion is drastically impaired in filaments lacking Rrm4 or conventional kinesin Kin1 as well as in filaments with disrupted microtubules. Thus, Rrm4-mediated mRNA transport appears to be essential for efficient export of active Cts1, uncovering a novel molecular link between mRNA transport and the mechanism of secretion.

Indexed as

RNA Processing, Post-TranscriptionalAmino Acid SequenceCell MembraneChitinasesFungal ProteinsGene Knockout TechniquesMolecular Sequence DataPhylogenyProtein BindingProtein TransportRibonucleoproteinsRNA-Binding ProteinsRNA, MessengerRNA TransportTwo-Dimensional Difference Gel ElectrophoresisUstilagoChitinasesFungal Proteinsmessenger ribonucleoproteinRibonucleoproteinsRNA-Binding ProteinsRNA, Messenger

Identifiers

PMID21808052
PMCPMC3237082
OpenAlexW1997928356

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.