Evidence map›Paper›PMID 21807506›Full record

ArticleBioorganic & medicinal chemistry letters2011

Identification of SQ609 as a lead compound from a library of dipiperidines.

Elena Bogatcheva, Colleen Hanrahan, Boris Nikonenko, Gladys de los Santos, Venkata Reddy, Ping Chen, Francis Barbosa, Leo Einck, Carol Nacy, Marina Protopopova

Abstract read
In one paragraph

Article in Bioorganic & medicinal chemistry letters, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. OvercomingActa pharmaceutica Sinica. B · 2022
    Review
  2. Review
  3. Molecule Property Analyses of Active Compounds forJournal of medicinal chemistry · 2020
    Review
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Investigational antimicrobial agents of 2013.Clinical microbiology reviews · 2013
    Review
  13. Review
  14. Review
  15. Chemotherapeutic interventions against tuberculosis.Pharmaceuticals (Basel, Switzerland) · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Elena BogatchevaSequella, Inc., 9610 Medical center Drive, Suite 200, Rockville, MD 20850, USA. elenabogatcheva@sequella.com
Colleen Hanrahan
Boris Nikonenko
Gladys de los Santos
Venkata Reddy
Ping Chen
Francis Barbosa
Leo Einck
Carol Nacy
Marina Protopopova

Funding

Second Generation Antibiotics from EthambutolUC1AI049514 · NIAID · SEQUELLA, INC. · PI PROTOPOPOVA, MARINA N · 2000 to 2000
$1.2M
Dipiperidines as a new class of anti-TB drugR43AI060250 · NIAID · SEQUELLA, INC. · PI PROTOPOPOVA, MARINA N · 2004 to 2004
$299k
NIAID NIH HHS 1R43AI060250NIAID NIH HHS R43 AI060250NIAID NIH HHS UC1 AI049514PHS HHS UC1A149514
6 · The paper itself

Abstract

We recently reported that compounds created around a dipiperidine scaffold demonstrated activity against Mycobacterium tuberculosis (Mtb) (Bogatcheva, E.; Hanrahan, C.; Chen, P.; Gearhart, J.; Sacksteder, K.; Einck, L.; Nacy, C.; Protopopova, M. Bioorg. Med. Chem. Lett.2010, 20, 201). To optimize the dipiperidine compound series and to select a lead compound to advance into preclinical studies, we evaluated the structure-activity relationship (SAR) of our proprietary libraries. The (piperidin-4-ylmethyl)piperidine scaffold was an essential structural element required for antibacterial activity. Based on SAR, we synthesized a focused library of 313 new dipiperidines to delineate additional structural features responsible for antitubercular activity. Thirty new active compounds with MIC 10-20 μg/ml on Mtb were identified, but none was better than the original hits of this series, SQ609, SQ614, and SQ615. In Mtb-infected macrophages in vitro, SQ609 and SQ614 inhibited more than 90% of intracellular bacterial growth at 4 μg/ml; SQ615 was toxic to these cells. In mice infected with Mtb, weight loss was completely prevented by SQ609, but not SQ614, and SQ609 had a prolonged therapeutic effect, extended by 10-15 days, after cessation of therapy. Based on in vitro and in vivo antitubercular activity, SQ609 was identified as the best-in-class dipiperidine compound in the series.

Indexed as

AdamantaneAnimalsAntitubercular AgentsDisease Models, AnimalDose-Response Relationship, DrugMacrophagesMiceMice, Inbred C3HMicrobial Sensitivity TestsMycobacterium tuberculosisPiperidinesSmall Molecule LibrariesStructure-Activity RelationshipWeight LossAdamantaneAntitubercular AgentsPiperidinesSmall Molecule LibrariesSQ 609

Identifiers

PMID21807506
PMCPMC3173259

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.