Evidence map›Paper›PMID 21806028›Full record

ArticleBiochemistry2011

Structure, stability, and interaction of fibrin αC-domain polymers.

Galina Tsurupa, Ariza Mahid, Yuri Veklich, John W Weisel, Leonid Medved

Open access · greenAbstract readComparative Study
In one paragraph

Article in Biochemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Fibrinogen and Fibrin.Sub-cellular biochemistry · 2021
    Review
  7. Article
  8. Atomic Structural Models of Fibrin Oligomers.Structure (London, England : 1993) · 2018
    Article
  9. Article
  10. The provisional matrix: setting the stage for tissue repair outcomes.Matrix biology : journal of the International Society for Matrix Biology · 2017
    Review
  11. Fibrin Formation, Structure and Properties.Sub-cellular biochemistry · 2017
    Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Galina TsurupaCenter for Vascular and Inflammatory Diseases and Department of Biochemistry and Molecular Biology, University of Maryland School of Medicine, Baltimore, Maryland 21201-1138, USA.
Ariza Mahid
Yuri Veklich
John W Weisel
Leonid Medved
University of Maryland, Baltimore · USUniversity of Pennsylvania · US

Funding

FIBRIN(OGEN) STRUCTURE AND INTERACTIONSR01HL056051 · NHLBI · UNIVERSITY OF MARYLAND BALTIMORE · PI LEONID V. MEDVED · 1998 to 2026
$9.1M
STRUCTURAL STUDIES OF BLOOD CLOTTING PROTEINSR01HL030954 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI WEISEL, JOHN W · 1985 to 2008
$3.0M
Structural origin of fibrin clot mechanical propertiesR01HL090774 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI WEISEL, JOHN W · 2009 to 2012
$1.6M
Structural origin of fibrin clot mechanical propertiesR56HL090774 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI WEISEL, JOHN W · 2014 to 2014
$408k
NHLBI NIH HHS HL030954NHLBI NIH HHS HL056051NHLBI NIH HHS HL090774NHLBI NIH HHS R01 HL030954NHLBI NIH HHS R01 HL056051NHLBI NIH HHS R01 HL090774NHLBI NIH HHS R56 HL090774
6 · The paper itself

Abstract

Our previous studies revealed that in fibrinogen the αC-domains are not reactive with their ligands, suggesting that their binding sites are cryptic and become exposed upon its conversion to fibrin, in which these domains form αC polymers. On the basis of this finding, we hypothesized that polymerization of the αC-domains in fibrin results in the exposure of their binding sites and that these domains adopt the physiologically active conformation only in αC-domain polymers. To test this hypothesis, we prepared a recombinant αC region (residues Aα221-610) including the αC-domain (Aα392-610), demonstrated that it forms soluble oligomers in a concentration-dependent and reversible manner, and stabilized such oligomers by covalently cross-linking them with factor XIIIa. Cross-linked Aα221-610 oligomers were stable in solution and appeared as ordered linear, branching filaments when analyzed by electron microscopy. Spectral studies revealed that the αC-domains in such oligomers were folded into compact structures of high thermal stability with a significant amount of β-sheets. These findings indicate that cross-linked Aα221-610 oligomers are highly ordered and mimic the structure of fibrin αC polymers. The oligomers also exhibited functional properties of polymeric fibrin because, in contrast to the monomeric αC-domain, they bound tPA and plasminogen and stimulated activation of the latter by the former. Altogether, the results obtained with cross-linked Aα221-610 oligomers clarify the structure of the αC-domains in fibrin αC polymers and confirm our hypothesis that their binding sites are exposed upon polymerization. Such oligomers represent a stable, soluble model of fibrin αC polymers that can be used for further structure-function studies of fibrin αC-domains.

Indexed as

Cross-Linking ReagentsFibrinogenHumansPeptide FragmentsPolymersProtein BindingProtein StabilityProtein Structure, TertiaryCross-Linking ReagentsFibrinogenfibrinogen alphaCPeptide FragmentsPolymers

Identifiers

PMID21806028
PMCPMC3172333
OpenAlexW2011190033

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.