Evidence map›Paper›PMID 21804753›Full record

ArticleThe VLDB journal : very large data bases : a publication of the VLDB Endowment2011

Performance analysis of a dual-tree algorithm for computing spatial distance histograms.

Shaoping Chen, Yi-Cheng Tu, Yuni Xia

Abstract read
In one paragraph

Article in The VLDB journal : very large data bases : a publication of the VLDB Endowment, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Computing Spatial Distance Histograms for Large Scientific Datasets On-the-Fly.IEEE transactions on knowledge and data engineering · 2014
    Article
  2. Performance Modeling in CUDA Streams - A Means for High-Throughput Data Processing.Proceedings : ... IEEE International Conference on Big Data. IEEE International Conference on Big Data · 2014
    Article
  3. Efficient SDH Computation In Molecular Simulations Data.ACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine · 2012
    Article
  4. Article
  5. Distance Histogram Computation Based on Spatiotemporal Uniformity in Scientific Data.Advances in database technology : proceedings. International Conference on Extending Database Technology · 2012
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Shaoping ChenDepartment of Mathematics, Wuhan University of Technology, 122 Luosi Road, 430070 Wuhan, Hubei, People's Republic of China chensp@whut.edu.cn.
Yi-Cheng Tu
Yuni Xia

Funding

Database-centric data analysis of molecular simulationsR01GM086707 · NIGMS · UNIVERSITY OF SOUTH FLORIDA · PI TU, YICHENG · 2010 to 2014
$863k
NIGMS NIH HHS R01 GM086707
6 · The paper itself

Abstract

Many scientific and engineering fields produce large volume of spatiotemporal data. The storage, retrieval, and analysis of such data impose great challenges to database systems design. Analysis of scientific spatiotemporal data often involves computing functions of all point-to-point interactions. One such analytics, the Spatial Distance Histogram (SDH), is of vital importance to scientific discovery. Recently, algorithms for efficient SDH processing in large-scale scientific databases have been proposed. These algorithms adopt a recursive tree-traversing strategy to process point-to-point distances in the visited tree nodes in batches, thus require less time when compared to the brute-force approach where all pairwise distances have to be computed. Despite the promising experimental results, the complexity of such algorithms has not been thoroughly studied. In this paper, we present an analysis of such algorithms based on a geometric modeling approach. The main technique is to transform the analysis of point counts into a problem of quantifying the area of regions where pairwise distances can be processed in batches by the algorithm. From the analysis, we conclude that the number of pairwise distances that are left to be processed decreases exponentially with more levels of the tree visited. This leads to the proof of a time complexity lower than the quadratic time needed for a brute-force algorithm and builds the foundation for a constant-time approximate algorithm. Our model is also general in that it works for a wide range of point spatial distributions, histogram types, and space-partitioning options in building the tree.

Identifiers

PMID21804753
PMCPMC3145372

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.