Evidence map›Paper›PMID 21804035›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

Dynamics and mechanism of cyclobutane pyrimidine dimer repair by DNA photolyase.

Zheyun Liu, Chuang Tan, Xunmin Guo, Ya-Ting Kao, Jiang Li, Lijuan Wang, Aziz Sancar, Dongping Zhong

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed.

  1. Quantum-enhanced coherent Raman spectroscopy with broadband squeezed-light detection.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Dynamics and mechanism of DNA repair by a bifunctional cryptochrome.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  9. Article
  10. Article
  11. Comparing ultrafast excited state quenching of flavin 1,NPhotochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2022
    Article
  12. Mapping atypical UV photoproductsSTAR protocols · 2022
    Article
  13. Review
  14. Review
  15. Photoinduced hole hopping through tryptophans in proteins.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Understanding Short-Range Electron-Transfer Dynamics in Proteins.The journal of physical chemistry letters · 2019
    Article

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Zheyun LiuDepartment of Physics, Programs of Biophysics, Chemical Physics, and Biochemistry, Ohio State University, 191 West Woodruff Avenue, Columbus, OH 43210, USA.
Chuang Tan
Xunmin Guo
Ya-Ting Kao
Jiang Li
Lijuan Wang
Aziz Sancar
Dongping Zhong

Funding

UNC-CH CENTER FOR ENVIRONMENTAL HEALTH &SUSCEPTIBILITYP30ES010126 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Melissa A. Troester · 2001 to 2026
$36.3M
Functional Dynamics and Molecular Mechanism of PhotolayseR01GM074813 · NIGMS · OHIO STATE UNIVERSITY · PI ZHONG, DONGPING · 2007 to 2016
$2.6M
NIEHS NIH HHS P30 ES010126NIGMS NIH HHS GM074813NIGMS NIH HHS R01 GM074813
6 · The paper itself

Abstract

Photolyase uses blue light to restore the major ultraviolet (UV)-induced DNA damage, the cyclobutane pyrimidine dimer (CPD), to two normal bases by splitting the cyclobutane ring. Our earlier studies showed that the overall repair is completed in 700 ps through a cyclic electron-transfer radical mechanism. However, the two fundamental processes, electron-tunneling pathways and cyclobutane ring splitting, were not resolved. Here, we use ultrafast UV absorption spectroscopy to show that the CPD splits in two sequential steps within 90 ps and the electron tunnels between the cofactor and substrate through a remarkable route with an intervening adenine. Site-directed mutagenesis reveals that the active-site residues are critical to achieving high repair efficiency, a unique electrostatic environment to optimize the redox potentials and local flexibility, and thus balance all catalytic reactions to maximize enzyme activity. These key findings reveal the complete spatio-temporal molecular picture of CPD repair by photolyase and elucidate the underlying molecular mechanism of the enzyme's high repair efficiency.

Indexed as

Aspergillus nidulansCatalysisCatalytic DomainDeoxyribodipyrimidine Photo-LyaseDNA, FungalDNA RepairFungal ProteinsMutagenesis, Site-DirectedPeptide MappingPyrimidine DimersSpectrophotometry, UltravioletDeoxyribodipyrimidine Photo-LyaseDNA, FungalFungal ProteinsPyrimidine Dimers

Identifiers

PMID21804035
PMCPMC3169159

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.