Evidence map›Paper›PMID 21804022›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2011

The multiple shark Ig H chain genes rearrange and hypermutate autonomously.

Catherine Zhu, Wendy Feng, Jeremy Weedon, Pauline Hua, Dimitre Stefanov, Yuko Ohta, Martin F Flajnik, Ellen Hsu

Open access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 24 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. The immunoglobulins of cartilaginous fishes.Developmental and comparative immunology · 2021
    Review
  4. Bamboo Shark as a Small Animal Model for Single Domain Antibody Production.Frontiers in bioengineering and biotechnology · 2021
    Article
  5. Article
  6. Fish Immunoglobulins.Biology · 2016
    Review
  7. Assembly and Expression of Shark Ig Genes.Journal of immunology (Baltimore, Md. : 1950) · 2016
    Review
  8. Biased Immunoglobulin Light Chain Gene Usage in the Shark.Journal of immunology (Baltimore, Md. : 1950) · 2015
    Article
  9. Review
  10. Article
  11. Article
  12. Evolution of B cell immunity.Annual review of animal biosciences · 2013
    Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Catherine ZhuDepartment of Physiology and Pharmacology, State University of New York Health Science Center at Brooklyn, Brooklyn, NY 11203, USA.
Wendy Feng
Jeremy Weedon
Pauline Hua
Dimitre Stefanov
Yuko Ohta
Martin F Flajnik
Ellen Hsu
State University of New York · USUniversity of Maryland, Baltimore · US

Funding

EVOLUTION OF THE MAJOR HISTOCOMPATIBILITY COMPLEXR01RR006603 · NCRR · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI FLAJNIK, MARTIN F · 1991 to 2011
$3.4M
Isotype Exclusion and Hypermutation in the Nurse SharkR01GM068095 · NIGMS · SUNY DOWNSTATE MEDICAL CENTER · PI HSU, ELLEN · 2004 to 2017
$3.1M
NCRR NIH HHS R01 RR006603NIGMS NIH HHS R01 GM068095
6 · The paper itself

Abstract

Sharks and skates are representatives of the earliest vertebrates with an immune system based on V(D)J rearrangement. They possess a unique Ig gene organization consisting of 15 to >50 individual IgM loci, each with one VH, two DH, one JH, and one set of constant region exons. The present study attempts to understand how multiple Ig genes are regulated with respect to rearrangement initiation and to targeting during somatic hypermutation. The linkage of three single-copy IgH genes was determined, and single-cell genomic PCR studies in a neonatal animal were used to examine any relationship between relative gene position and likelihood of rearrangement. Our results show that one to three IgH genes are activated independently of linkage or allelic position and the data best fit with a probability model based on the hypothesis that V(D)J rearrangement occurs as a sequence of trials within the B cell. In the neonatal cell set, two closely related IgH, G2A, and G2B, rearranged at similar frequencies, and their membrane forms were expressed at similar levels, like in other young animals. However, older animals displayed a bias in favor of the G2A isotype, which suggests that although rearrangement at G2A and G2B was randomly initiated during primary repertoire generation, the two very similar IgM sequences appear to be differentially expressed with age and exposure to Ag. We performed genomic single-cell PCR on B cells from an immunized individual to study activation-induced cytidine deaminase targeting and found that hypermutation, like V(D)J rearrangement, occurred independently among the many shark IgH.

Indexed as

AnimalsBase SequenceCell SeparationFlow CytometryGene Rearrangement, B-Lymphocyte, Heavy ChainGenes, ImmunoglobulinImmunoglobulin Heavy ChainsMolecular Sequence DataReverse Transcriptase Polymerase Chain ReactionSharksSomatic Hypermutation, ImmunoglobulinImmunoglobulin Heavy Chains

Identifiers

PMID21804022
PMCPMC3190574
OpenAlexW2128360360

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.