ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2011
Genomic structure of the cyanobacterium Synechocystis sp. PCC 6803 strain GT-S.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.
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24 citing papers in PubMed, 46 citations in OpenAlex.
- Further evidence supporting the existence and accumulation of triacylglycerol and acylplastoquinol in cyanobacteria.Plant physiology · 2025Article
- The genome sequence of Synechocystis sp. PCC 6803 substrain GT-T and its implications for the evolution of PCC 6803 substrains.FEBS open bio · 2023Article
- Enhancing photosynthesis at high light levels by adaptive laboratory evolution.Nature plants · 2021Article
- Genetic, Genomics, and Responses to Stresses in Cyanobacteria: Biotechnological Implications.Genes · 2021Review
- Evolution of Ycf54-independent chlorophyll biosynthesis in cyanobacteria.Proceedings of the National Academy of Sciences of the United States of America · 2021Article
- Mutations Suppressing the Lack of Prepilin Peptidase Provide Insights Into the Maturation of the Major Pilin Protein in Cyanobacteria.Frontiers in microbiology · 2021Article
- Resequencing of the Red Alga Cyanidioschyzon merolae: Strain Differences and Mitochondrial Sequence Corrections.Microbiology resource announcements · 2020Article
- Type IV Pili-Independent Photocurrent Production by the CyanobacteriumFrontiers in microbiology · 2020Article
- Recent Advances in Biological Functions of Thick Pili in the CyanobacteriumFrontiers in plant science · 2020Review
- Three Substrains of the Cyanobacterium Anabaena sp. Strain PCC 7120 Display Divergence in Genomic Sequences andJournal of bacteriology · 2018Article
- Complete Genome Sequence of the Nonheterocystous CyanobacteriumGenome announcements · 2018Article
- Phenotypic characterization of Synechocystis sp. PCC 6803 substrains reveals differences in sensitivity to abiotic stress.PloS one · 2017Article
- The Response Regulator Slr1588 RegulatesFrontiers in microbiology · 2017Article
- Draft Genome Sequences of Four Species of Chlamydomonas Containing Phosphatidylcholine.Genome announcements · 2016Article
- Identification of Specific Variations in a Non-Motile Strain of Cyanobacterium Synechocystis sp. PCC 6803 Originated from ATCC 27184 by Whole Genome Resequencing.International journal of molecular sciences · 2015Article
- Sll0528, a Site-2-Protease, Is Critically Involved in Cold, Salt and Hyperosmotic Stress Acclimation of Cyanobacterium Synechocystis sp. PCC 6803.International journal of molecular sciences · 2014Article
- Cellular Dynamics Drives the Emergence of Supracellular Structure in the Cyanobacterium, Phormidium sp. KS.Life (Basel, Switzerland) · 2014Article
- Comparative genome analysis of the closely related Synechocystis strains PCC 6714 and PCC 6803.DNA research : an international journal for rapid publication of reports on genes and genomes · 2014Article
- Global transcriptional profiles of the copper responses in the cyanobacterium Synechocystis sp. PCC 6803.PloS one · 2014Article
- Development of Synechocystis sp. PCC 6803 as a phototrophic cell factory.Marine drugs · 2013Review
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Authors and funding
12 authors at 6 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Synechocystis sp. PCC 6803 is the most popular cyanobacterial strain, serving as a standard in the research fields of photosynthesis, stress response, metabolism and so on. A glucose-tolerant (GT) derivative of this strain was used for genome sequencing at Kazusa DNA Research Institute in 1996, which established a hallmark in the study of cyanobacteria. However, apparent differences in sequences deviating from the database have been noticed among different strain stocks. For this reason, we analysed the genomic sequence of another GT strain (GT-S) by 454 and partial Sanger sequencing. We found 22 putative single nucleotide polymorphisms (SNPs) in comparison to the published sequence of the Kazusa strain. However, Sanger sequencing of 36 direct PCR products of the Kazusa strains stored in small aliquots resulted in their identity with the GT-S sequence at 21 of the 22 sites, excluding the possibility of their being SNPs. In addition, we were able to combine five split open reading frames present in the database sequence, and to remove the C-terminus of an ORF. Aside from these, two of the Insertion Sequence elements were not present in the GT-S strain. We have thus become able to provide an accurate genomic sequence of Synechocystis sp. PCC 6803 for future studies on this important cyanobacterial strain.
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