Evidence map›Paper›PMID 21801446›Full record

ArticleBMC genomics2011

Comparative analysis of two complete Corynebacterium ulcerans genomes and detection of candidate virulence factors.

Eva Trost, Arwa Al-Dilaimi, Panagiotis Papavasiliou, Jessica Schneider, Prisca Viehoever, Andreas Burkovski, Siomar C Soares, Sintia S Almeida, Fernanda A Dorella, Anderson Miyoshi and 10 more

Open access · goldAbstract readComparative Study
In one paragraph

Article in BMC genomics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
5.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 104 citations in OpenAlex.

  1. First isolation of nontoxigenic tox gene-bearing Corynebacterium ulcerans from a diphtheria case in Minas Gerais, Brazil.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2026
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  3. An underestimated pathogen:Journal of clinical microbiology · 2025
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  5. Quinolone Resistance and Zoonotic Potential ofAntibiotics (Basel, Switzerland) · 2025
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  7. Identification ofmSphere · 2024
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  8. Phylogenomic analyses of multidrug resistant Corynebacterium striatum strains isolated from patients in a tertiary care hospital in the UK.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2024
    Article
  9. Rising prevalence and drug resistance ofFrontiers in cellular and infection microbiology · 2024
    Review
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  13. Analysis ofPeerJ · 2023
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  14. Multi-Omics ofProteomes · 2022
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  15. Review
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  17. Newly Isolated Animal PathogenInternational journal of molecular sciences · 2021
    Article
  18. Article
  19. Case Report: ToxigenicFrontiers in veterinary science · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 5 institutions in 2 countries.

Eva TrostInstitut für Genomforschung und Systembiologie, Centrum für Biotechnologie, Universität Bielefeld, Universitätsstraße 27, D-33615 Bielefeld, Germany.
Arwa Al-Dilaimi
Panagiotis Papavasiliou
Jessica Schneider
Prisca Viehoever
Andreas Burkovski
Siomar C Soares
Sintia S Almeida
Fernanda A Dorella
Anderson Miyoshi
Vasco Azevedo
Maria P Schneider
Artur Silva
Cíntia S Santos
Louisy S Santos
Priscila Sabbadini
Alexandre A Dias
Raphael Hirata
Ana L Mattos-Guaraldi
Andreas Tauch
Bielefeld University · DEUniversidade do Estado do Rio de Janeiro · BRUniversidade Federal de Minas Gerais · BRUniversidade Federal do Pará · BRFriedrich-Alexander-Universität Erlangen-Nürnberg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCorynebacterium ulcerans has been detected as a commensal in domestic and wild animals that may serve as reservoirs for zoonotic infections. During the last decade, the frequency and severity of human infections associated with C. ulcerans appear to be increasing in various countries. As the knowledge of genes contributing to the virulence of this bacterium was very limited, the complete genome sequences of two C. ulcerans strains detected in the metropolitan area of Rio de Janeiro were determined and characterized by comparative genomics: C. ulcerans 809 was initially isolated from an elderly woman with fatal pulmonary infection and C. ulcerans BR-AD22 was recovered from a nasal sample of an asymptomatic dog.

resultsThe circular chromosome of C. ulcerans 809 has a total size of 2,502,095 bp and encodes 2,182 predicted proteins, whereas the genome of C. ulcerans BR-AD22 is 104,279 bp larger and comprises 2,338 protein-coding regions. The minor difference in size of the two genomes is mainly caused by additional prophage-like elements in the C. ulcerans BR-AD22 chromosome. Both genomes show a highly similar order of orthologous coding regions; and both strains share a common set of 2,076 genes, demonstrating their very close relationship. A screening for prominent virulence factors revealed the presence of phospholipase D (Pld), neuraminidase H (NanH), endoglycosidase E (EndoE), and subunits of adhesive pili of the SpaDEF type that are encoded in both C. ulcerans genomes. The rbp gene coding for a putative ribosome-binding protein with striking structural similarity to Shiga-like toxins was additionally detected in the genome of the human isolate C. ulcerans 809.

conclusionsThe molecular data deduced from the complete genome sequences provides considerable knowledge of virulence factors in C. ulcerans that is increasingly recognized as an emerging pathogen. This bacterium is apparently equipped with a broad and varying set of virulence factors, including a novel type of a ribosome-binding protein. Whether the respective protein contributes to the severity of human infections (and a fatal outcome) remains to be elucidated by genetic experiments with defined bacterial mutants and host model systems.

Indexed as

GenomicsAgedAmino Acid SequenceAnimalsBacterial ProteinsCorynebacteriumDogsFemaleGene OrderGenome, BacterialHumansModels, MolecularMolecular Sequence DataProphagesProtein ConformationVirulence FactorsBacterial ProteinsVirulence Factors

Identifiers

PMID21801446
PMCPMC3164646
OpenAlexW2072466300

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.