Evidence map›Paper›PMID 21799889›Full record

ArticlePloS one2011

Zinc-regulated DNA binding of the yeast Zap1 zinc-responsive activator.

Avery G Frey, Amanda J Bird, Marguerite V Evans-Galea, Elizabeth Blankman, Dennis R Winge, David J Eide

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. mmBio · 2025
    Article
  3. Metals at the Host-Fungal Pathogen Battleground.Annual review of microbiology · 2024
    Review
  4. Review
  5. Fungal-Metal Interactions: A Review of Toxicity and Homeostasis.Journal of fungi (Basel, Switzerland) · 2021
    Review
  6. Article
  7. Zinc at the Host-Fungus Interface: How to Uptake the Metal?Journal of fungi (Basel, Switzerland) · 2020
    Review
  8. The Role of Zinc in Copper Homeostasis ofInternational journal of molecular sciences · 2020
    Article
  9. Article
  10. Transcription factors and transporters in zinc homeostasis: lessons learned from fungi.Critical reviews in biochemistry and molecular biology · 2020
    Review
  11. Insights IntoFrontiers in cellular and infection microbiology · 2020
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Zinc availability during germline development impacts embryo viability in Caenorhabditis elegans.Comparative biochemistry and physiology. Toxicology & pharmacology : CBP · 2017
    Article
  19. Zinc sensing and regulation in yeast model systems.Archives of biochemistry and biophysics · 2016
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Avery G FreyDepartment of Nutritional Sciences, University of Wisconsin-Madison, Madison, Wisconsin, United States of America.
Amanda J Bird
Marguerite V Evans-Galea
Elizabeth Blankman
Dennis R Winge
David J Eide
University of Utah · USUniversity of Wisconsin–Madison · US

Funding

TRAINING IN NUTRITIONT32DK007665 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI GUY E GROBLEWSKI, Chi- Liang Eric Yen · 1993 to 2026
$9.2M
REGULATION OF CELLULAR ZINC HOMEOSTASISR01GM056285 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI EIDE, DAVID J · 1997 to 2022
$6.2M
Metal Homeostatic Mechanisms in YeastR01GM083292 · NIGMS · UNIVERSITY OF UTAH · PI WINGE, DENNIS R. · 2008 to 2011
$1.2M
NIDDK NIH HHS T32 DK007665NIDDK NIH HHS T32-DK007665NIGMS NIH HHS R01 GM056285NIGMS NIH HHS R01-GM056285NIGMS NIH HHS R01 GM083292NIGMS NIH HHS R01-GM083292
6 · The paper itself

Abstract

The Zap1 transcription factor of Saccharomyces cerevisiae plays a central role in zinc homeostasis by controlling the expression of genes involved in zinc metabolism. Zap1 is active in zinc-limited cells and repressed in replete cells. At the transcriptional level, Zap1 controls its own expression via positive autoregulation. In addition, Zap1's two activation domains are regulated independently of each other by zinc binding directly to those regions and repressing activation function. In this report, we show that Zap1 DNA binding is also inhibited by zinc. DMS footprinting showed that Zap1 target gene promoter occupancy is regulated with or without transcriptional autoregulation. These results were confirmed using chromatin immunoprecipitation. Zinc regulation of DNA binding activity mapped to the DNA binding domain indicating other parts of Zap1 are unnecessary for this control. Overexpression of Zap1 overrode DNA binding regulation and resulted in constitutive promoter occupancy. Under these conditions of constitutive binding, both the zinc dose response of Zap1 activity and cellular zinc accumulation were altered suggesting the importance of DNA binding control to zinc homeostasis. Thus, our results indicated that zinc regulates Zap1 activity post-translationally via three independent mechanisms, all of which contribute to the overall zinc responsiveness of Zap1.

Indexed as

Active Transport, Cell NucleusBase SequenceCell NucleusDNAHomeostasisMolecular Sequence DataProtein BindingProtein Structure, TertiaryResponse ElementsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription FactorsTranscription, GeneticZincDNASaccharomyces cerevisiae ProteinsTranscription FactorsZAP1 protein, S cerevisiaeZinc

Identifiers

PMID21799889
PMCPMC3142189
OpenAlexW2093952645

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.