Evidence map›Paper›PMID 21799754›Full record

ArticlePloS one2011

Structural and sequence analysis of imelysin-like proteins implicated in bacterial iron uptake.

Qingping Xu, Neil D Rawlings, Carol L Farr, Hsiu-Ju Chiu, Joanna C Grant, Lukasz Jaroszewski, Heath E Klock, Mark W Knuth, Mitchell D Miller, Dana Weekes and 5 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 24 citations in OpenAlex.

  1. Time-Course Gene Expression of 'Microorganisms · 2025
    Article
  2. Article
  3. Article
  4. Crystal structure and metal binding properties of the periplasmic iron component EfeM from Pseudomonas syringae EfeUOB/M iron-transport system.Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2022
    Article
  5. Article
  6. Article
  7. The Complete Genome Sequence of the Fish PathogenFrontiers in microbiology · 2017
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. The iron-regulated staphylococcal lipoproteins.Frontiers in cellular and infection microbiology · 2012
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 8 institutions in 2 countries.

Qingping XuJoint Center for Structural Genomics, La Jolla, California, United States of America.
Neil D Rawlings
Carol L Farr
Hsiu-Ju Chiu
Joanna C Grant
Lukasz Jaroszewski
Heath E Klock
Mark W Knuth
Mitchell D Miller
Dana Weekes
Marc-André Elsliger
Ashley M Deacon
Adam Godzik
Scott A Lesley
Ian A Wilson
Joint Center for Structural Genomics · USScripps Research Institute · USGenomics Institute of the Novartis Research Foundation · USUniversity of California, San Diego · USSanford Burnham Prebys Medical Discovery Institute · USSLAC National Accelerator Laboratory · USStanford Synchrotron Radiation Lightsource · USWellcome Sanger Institute · GB

Funding

Technology Evaluation CoreU54GM074898 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI STEVENS, RAYMOND C · 2005 to 2009
$50.6M
Structure Determination Core at SSRLU54GM094586 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI WILSON, IAN A · 2010 to 2014
$40.1M
NIGMS NIH HHS U54 GM074898NIGMS NIH HHS U54 GM094586
6 · The paper itself

Abstract

Imelysin-like proteins define a superfamily of bacterial proteins that are likely involved in iron uptake. Members of this superfamily were previously thought to be peptidases and were included in the MEROPS family M75. We determined the first crystal structures of two remotely related, imelysin-like proteins. The Psychrobacter arcticus structure was determined at 2.15 Å resolution and contains the canonical imelysin fold, while higher resolution structures from the gut bacteria Bacteroides ovatus, in two crystal forms (at 1.25 Å and 1.44 Å resolution), have a circularly permuted topology. Both structures are highly similar to each other despite low sequence similarity and circular permutation. The all-helical structure can be divided into two similar four-helix bundle domains. The overall structure and the GxHxxE motif region differ from known HxxE metallopeptidases, suggesting that imelysin-like proteins are not peptidases. A putative functional site is located at the domain interface. We have now organized the known homologous proteins into a superfamily, which can be separated into four families. These families share a similar functional site, but each has family-specific structural and sequence features. These results indicate that imelysin-like proteins have evolved from a common ancestor, and likely have a conserved function.

Indexed as

Sequence Analysis, ProteinAmino Acid MotifsAmino Acid SequenceBacterial ProteinsBacteroidesBiological TransportConserved SequenceIronModels, MolecularMolecular Sequence DataProtein Structure, TertiaryPsychrobacterStructure-Activity RelationshipBacterial ProteinsIron

Identifiers

PMID21799754
PMCPMC3143127
OpenAlexW2145668406

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.