Evidence map›Paper›PMID 21799540›Full record

ArticleChemical engineering science2010

Efficiency of the Polymerase Chain Reaction.

Christine S Booth, Elsje Pienaar, Joel R Termaat, Scott E Whitney, Tobias M Louw, Hendrik J Viljoen

Abstract read
In one paragraph

Article in Chemical engineering science, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Review
  3. A Real-Time PCR Assay for Detecting Codling MothInternational journal of molecular sciences · 2025
    Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Variability in CharacterizingMicroorganisms · 2018
    Article
  13. Detection of Typhoidal and Paratyphoidal Salmonella in Blood by Real-time Polymerase Chain Reaction.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2015
    Article
  14. Multi-template polymerase chain reaction.Biomolecular detection and quantification · 2014
    Review
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Christine S BoothDepartment of Chemical and Biomolecular Engineering, University of Nebraska-Lincoln Lincoln, NE 68588-0643.
Elsje Pienaar
Joel R Termaat
Scott E Whitney
Tobias M Louw
Hendrik J Viljoen

Funding

A Rational Design of a Platform for de novo Gene SynthesisR33RR022860 · NCRR · UNIVERSITY OF NEBRASKA LINCOLN · PI VILJOEN, HENDRIK J · 2008 to 2010
$967k
A Rational Design of a Platform for de novo Gene SynthesisR21RR022860 · NCRR · UNIVERSITY OF NEBRASKA LINCOLN · PI VILJOEN, HENDRIK J · 2006 to 2007
$346k
NCRR NIH HHS R33 RR022860
6 · The paper itself

Abstract

The polymerase chain reaction (PCR) has found wide application in biochemistry and molecular biology such as gene expression studies, mutation detection, forensic analysis and pathogen detection. Increasingly quantitative real time PCR is used to assess copy numbers from overall yield. In this study the yield is analyzed as a function of several processes: (1) thermal damage of the template and polymerase occurs during the denaturing step, (2) competition exists between primers and templates to either anneal or form dsDNA, (3) polymerase binding to annealed products (primer/ssDNA) to form ternary complexes and (4) extension of ternary complexes. Explicit expressions are provided for the efficiency of each process, therefore reaction conditions can be directly linked to the overall yield. Examples are provided where different processes play the yield-limiting role. The analysis will give researchers a unique understanding of the factors that control the reaction and will aid in the interpretation of experimental results.

Identifiers

PMID21799540
PMCPMC3142788

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.