Evidence map›Paper›PMID 21799486›Full record

ArticleNature protocols2011

Selection of proteins with desired properties from natural proteome libraries using mRNA display.

Steven W Cotten, Jianwei Zou, C Alexander Valencia, Rihe Liu

Abstract read
PubMed Publisher
In one paragraph

Article in Nature protocols, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. ACS synthetic biology · 2020
    Review
  5. Article
  6. Review
  7. Article
  8. Review
  9. Peptide aptamers: development and applications.Current topics in medicinal chemistry · 2015
    Review
  10. Article
  11. Article
  12. Article
  13. Streamlined protocol for mRNA display.ACS combinatorial science · 2013
    Article
  14. Article
  15. In vitro evolution of enzymes.Methods in molecular biology (Clifton, N.J.) · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Steven W CottenEshelman School of Pharmacy and Carolina Center for Genome Sciences, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
Jianwei Zou
C Alexander Valencia
Rihe Liu

Funding

"Smart" Nanoparticles for Cancer Therapy and ImagingU54CA119343 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI JULIANO, RUDOLPH · 2005 to 2009
$18.3M
Identification of Caspase Substrates from Human ProteomeR01NS047650 · NINDS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI LIU, RIHE · 2004 to 2008
$1.4M
Identification of the Interactome of Methylated Histones from Human ProteomeR21DA025702 · NIDA · UNIV OF NORTH CAROLINA CHAPEL HILL · PI LIU, RIHE · 2008 to 2009
$647k
NCI NIH HHS CA119343NIDA NIH HHS DA025702NINDS NIH HHS NS047650
6 · The paper itself

Abstract

mRNA display is a powerful yet challenging in vitro selection technique that can be used to identify proteins with desired properties from both natural proteome and combinatorial polypeptide libraries. The physical conjugation between a protein and its own RNA presents unique challenges in manipulating the displayed proteins at a low nanomolar scale in an RNase-free environment. The following protocol outlines the generation of cDNA libraries derived from natural organisms as well as the steps required for generation of mRNA-protein fusion molecules, in vitro functional selection and regeneration of the selected cDNA library. The selection procedures for the identification of protease substrates and Ca(2+)-dependent calmodulin-binding proteins from natural cDNA libraries are presented as examples. The method can be generally applied to the identification of protein sequences with desired properties from various natural proteome libraries. One round of mRNA display-based selection can be accomplished in ~7 d.

Indexed as

Gene LibraryProteomeGene Expression ProfilingRNA, MessengerProteomeRNA, Messenger

Identifiers

PMID21799486

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.