Evidence map›Paper›PMID 21798897›Full record

ArticleScience (New York, N.Y.)2011

Exome sequencing of head and neck squamous cell carcinoma reveals inactivating mutations in NOTCH1.

Nishant Agrawal, Mitchell J Frederick, Curtis R Pickering, Chetan Bettegowda, Kyle Chang, Ryan J Li, Carole Fakhry, Tong-Xin Xie, Jiexin Zhang, Jing Wang and 21 more

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1,012 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
1,012citing papers in PubMed, 2 pooled it
64.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1,012 citing papers in PubMed, 2 syntheses or guidelines pooled it, 1,682 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Trial
  4. Trial
  5. Article
  6. Context-DependentLaryngoscope investigative otolaryngology · 2026
    Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Multivariate Random Forests for Cross-Modal Multi-Omics Integration.bioRxiv : the preprint server for biology · 2026
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Long-term outcomes among individuals living with and beyond head and neck cancer: a scoping review.Supportive care in cancer : official journal of the Multinational Association of Supportive Care in Cancer · 2026
    Article
  17. Article
  18. Article
  19. Article
  20. Article

952 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

31 authors at 3 institutions in 1 country.

Nishant AgrawalDepartment of Otolaryngology-Head and Neck Surgery, Johns Hopkins University School of Medicine, 600 North Wolfe Street, Baltimore, MD 21287, USA. nagrawal@jhmi.edu
Mitchell J Frederick
Curtis R Pickering
Chetan Bettegowda
Kyle Chang
Ryan J Li
Carole Fakhry
Tong-Xin Xie
Jiexin Zhang
Jing Wang
Nianxiang Zhang
Adel K El-Naggar
Samar A Jasser
John N Weinstein
Lisa Treviño
Jennifer A Drummond
Donna M Muzny
Yuanqing Wu
Laura D Wood
Ralph H Hruban
William H Westra
Wayne M Koch
Joseph A Califano
Richard A Gibbs
David Sidransky
Bert Vogelstein
Victor E Velculescu
Nickolas Papadopoulos
David A Wheeler
Kenneth W Kinzler
Jeffrey N Myers
Baylor College of Medicine · USJohns Hopkins University · USJohns Hopkins Medicine · US

Funding

The Human Genome Sequencing CenterU54HG003273 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI GIBBS, RICHARD A · 2004 to 2015
$341.3M
Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Kathrin Milbury · 1985 to 2026
$290.8M
TUMOR SUPPRESOR GENE PROMOTER HYPERMETHYLATION FOR DETECTION OF HEAD AND NECKP50DE019032 · NIDCR · JOHNS HOPKINS UNIVERSITY · PI SIDRANSKY, DAVID · 2007 to 2016
$27.1M
Targeting the p53 pathway for reversal of oral premalignancyP50CA097007 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI MYERS, JEFFREY NICHOLAS · 2002 to 2012
$26.1M
MOLECULAR GENETIC ANALYSIS OF COLORECTAL CANCERR37CA043460 · NCI · JOHNS HOPKINS UNIVERSITY · PI VOGELSTEIN, BERT · 1997 to 2016
$7.4M
Genes from the FAP LocusR37CA057345 · NCI · JOHNS HOPKINS UNIVERSITY · PI KINZLER, KENNETH W. · 2002 to 2016
$7.4M
Large-Scale Genetic Analyses of Human CancerR01CA121113 · NCI · JOHNS HOPKINS UNIVERSITY · PI ANAGNOSTOU, VALSAMO, VELCULESCU, VICTOR E. · 2006 to 2022
$4.3M
Molecular progression model for HNSCCR37DE012588 · NIDCR · JOHNS HOPKINS UNIVERSITY · PI SIDRANSKY, DAVID · 2004 to 2012
$3.3M
RESEARCH TRAINING IN NEURO-ONCOLOGY FOR NEUROSURGEONST32CA009574 · NCI · JOHNS HOPKINS UNIVERSITY · PI GROSSMAN, STUART A · 1987 to 2012
$2.6M
Genone-wide Discovery of Molecular Alterations in Head and Neck CancerRC2DE020957 · NIDCR · JOHNS HOPKINS UNIVERSITY · PI AGRAWAL, NISHANT, SIDRANSKY, DAVID · 2009 to 2010
$2.5M
Comprehensive Analysis of Genetic Alterations in Oral CancerRC2DE020958 · NIDCR · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI GIBBS, RICHARD A, MYERS, JEFFREY NICHOLAS · 2009 to 2010
$2.4M
GENES FROM THE FAP LOCUSR01CA057345 · NCI · JOHNS HOPKINS UNIVERSITY · PI KINZLER, KENNETH W. · 1992 to 2001
$734k
Howard Hughes Medical InstituteNCI NIH HHS 5P50CA09700708NCI NIH HHS CA121113NCI NIH HHS CA16672NCI NIH HHS CA43460NCI NIH HHS CA57345NCI NIH HHS CN43302NCI NIH HHS N01 CN043302NCI NIH HHS P50 CA097007NCI NIH HHS R01 CA121113NCI NIH HHS R37 CA043460NCI NIH HHS R37 CA057345NCI NIH HHS T32 CA009574NHGRI NIH HHS U54 HG003273NIDCR NIH HHS P50 DE019032NIDCR NIH HHS P50DE019032NIDCR NIH HHS R37 DE012588NIDCR NIH HHS RC2 DE020957NIDCR NIH HHS RC2DE020957NIDCR NIH HHS RC2 DE020958NIDCR NIH HHS RC2DE020958
6 · The paper itself

Abstract

Head and neck squamous cell carcinoma (HNSCC) is the sixth most common cancer worldwide. To explore the genetic origins of this cancer, we used whole-exome sequencing and gene copy number analyses to study 32 primary tumors. Tumors from patients with a history of tobacco use had more mutations than did tumors from patients who did not use tobacco, and tumors that were negative for human papillomavirus (HPV) had more mutations than did HPV-positive tumors. Six of the genes that were mutated in multiple tumors were assessed in up to 88 additional HNSCCs. In addition to previously described mutations in TP53, CDKN2A, PIK3CA, and HRAS, we identified mutations in FBXW7 and NOTCH1. Nearly 40% of the 28 mutations identified in NOTCH1 were predicted to truncate the gene product, suggesting that NOTCH1 may function as a tumor suppressor gene rather than an oncogene in this tumor type.

Indexed as

Genes, Tumor SuppressorMutationCarcinomaCarcinoma, Squamous CellCell Cycle ProteinsCodon, NonsenseExonsF-Box ProteinsF-Box-WD Repeat-Containing Protein 7Gene DosageGenes, p53Head and Neck NeoplasmsHumansINDEL MutationMutation, MissenseNeoplasms, Squamous CellCell Cycle ProteinsCodon, NonsenseF-Box ProteinsF-Box-WD Repeat-Containing Protein 7FBXW7 protein, humanNOTCH1 protein, humanReceptor, Notch1Ubiquitin-Protein Ligases

Identifiers

PMID21798897
PMCPMC3162986
OpenAlexW2004637409

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.