Evidence map›Paper›PMID 21798893›Full record

ArticleScience (New York, N.Y.)2011

The mutational landscape of head and neck squamous cell carcinoma.

Nicolas Stransky, Ann Marie Egloff, Aaron D Tward, Aleksandar D Kostic, Kristian Cibulskis, Andrey Sivachenko, Gregory V Kryukov, Michael S Lawrence, Carrie Sougnez, Aaron McKenna and 29 more

2 registry-linked trialsOpen access · bronzeAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to 2 registered trials, which are not on this map. Cited by 1,465 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
1,465citing papers in PubMed, 2 pooled it
86.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03350698 phase4unknown statusnot on this mapstarted 2018, after this paper: background citation

Occupational Exposure to Human Papilloma Virus (HPV) and Prophylactic Vaccination (Version IV Dated 24Oct2017)

TypeinterventionalSponsorEastern Virginia Medical SchoolRan2018 to 2023Enrolled100ConditionsPapillomavirus VaccinesArmsGardasil-9
NCT03938012 unknown statusnot on this mapstarted 2017, after this paper: background citation

Evaluating Mutations in MET and TP53 Among Patients Diagnosed With Squamous Cell Carcinoma

TypeobservationalSponsorNational University Hospital, SingaporeRan2017 to 2022Enrolled80ConditionsSquamous Cell Carcinoma of the Lung, Squamous Cell Carcinoma of the Head and Neck
3 · Its place in the literature

Who cites it

1,465 citing papers in PubMed, 2 syntheses or guidelines pooled it, 2,526 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Trial
  4. Trial
  5. Trial
  6. Context-DependentLaryngoscope investigative otolaryngology · 2026
    Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Multivariate Random Forests for Cross-Modal Multi-Omics Integration.bioRxiv : the preprint server for biology · 2026
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review

1,405 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

39 authors at 7 institutions in 2 countries.

Nicolas StranskyThe Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Ann Marie Egloff
Aaron D Tward
Aleksandar D Kostic
Kristian Cibulskis
Andrey Sivachenko
Gregory V Kryukov
Michael S Lawrence
Carrie Sougnez
Aaron McKenna
Erica Shefler
Alex H Ramos
Petar Stojanov
Scott L Carter
Douglas Voet
Maria L Cortés
Daniel Auclair
Michael F Berger
Gordon Saksena
Candace Guiducci
Robert C Onofrio
Melissa Parkin
Marjorie Romkes
Joel L Weissfeld
Raja R Seethala
Lin Wang
Claudia Rangel-Escareño
Juan Carlos Fernandez-Lopez
Alfredo Hidalgo-Miranda
Jorge Melendez-Zajgla
Wendy Winckler
Kristin Ardlie
Stacey B Gabriel
Matthew Meyerson
Eric S Lander
Gad Getz
Todd R Golub
Levi A Garraway
Jennifer R Grandis
Broad Institute · USNational Institute of Genomic Medicine · MXDana-Farber Cancer Institute · USHarvard University · USUPMC Hillman Cancer Center · USMassachusetts Eye and Ear Infirmary · USMassachusetts Institute of Technology · US

Funding

Large Scale Sequencing and Analysis of GenomesU54HG003067 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GABRIEL, STACEY, LANDER, ERIC S · 2004 to 2015
$568.6M
University of Pittsburgh Clinical and Translational Science InstituteUL1TR000005 · NCATS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI REIS, STEVEN E · 2012 to 2015
$50.8M
WILD TYPE P53-BASED ADJUVANT IMMUNOTHERAPY FOR SCCHNP50CA097190 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Heath Devin Skinner, Jose P. Zevallos · 2004 to 2026
$49.6M
STAT-Mediated TGFalpha EGFR Signaling in squamous cell carcinoma of head neckR01CA077308 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI GRANDIS, JENNIFER RUBIN · 1998 to 2018
$5.0M
GRPR Signaling in SCCHN: Integration with EGFRR01CA098372 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI GRANDIS, JENNIFER RUBIN · 2004 to 2017
$3.8M
Howard Hughes Medical InstituteNCATS NIH HHS UL1 TR000005NCI NIH HHS P50 CA097190NCI NIH HHS R01 CA077308NCI NIH HHS R01 CA098372NHGRI NIH HHS U54 HG003067
6 · The paper itself

Abstract

Head and neck squamous cell carcinoma (HNSCC) is a common, morbid, and frequently lethal malignancy. To uncover its mutational spectrum, we analyzed whole-exome sequencing data from 74 tumor-normal pairs. The majority exhibited a mutational profile consistent with tobacco exposure; human papillomavirus was detectable by sequencing DNA from infected tumors. In addition to identifying previously known HNSCC genes (TP53, CDKN2A, PTEN, PIK3CA, and HRAS), our analysis revealed many genes not previously implicated in this malignancy. At least 30% of cases harbored mutations in genes that regulate squamous differentiation (for example, NOTCH1, IRF6, and TP63), implicating its dysregulation as a major driver of HNSCC carcinogenesis. More generally, the results indicate the ability of large-scale sequencing to reveal fundamental tumorigenic mechanisms.

Indexed as

MutationSequence Analysis, DNAAlgorithmsApoptosisCarcinomaCarcinoma, Squamous CellCell DifferentiationExonsHead and Neck NeoplasmsHumansNeoplasms, Squamous CellPapillomaviridaePapillomavirus InfectionsPoint MutationReceptor, Notch1Sequence DeletionNOTCH1 protein, humanReceptor, Notch1

Identifiers

PMID21798893
PMCPMC3415217
OpenAlexW2062312459

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.