ArticleMolecular biotechnology2012
Identification of miRNAs and their target genes using deep sequencing and degradome analysis in trifoliate orange [Poncirus trifoliata L. Raf] [corrected].
Article in Molecular biotechnology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 25 papers.
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Who cites it
25 citing papers in PubMed.
- miR156-SPLs module regulates flowering and controls plant height by modulating gibberellin biosynthesis in citrus.Plant biotechnology journal · 2025Article
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- Identification and Expression of miRNAs Related to Female Flower Induction in Walnut (Molecules (Basel, Switzerland) · 2018Article
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- Using Biotechnology-Led Approaches to Uplift Cereal and Food Legume Yields in Dryland Environments.Frontiers in plant science · 2018Review
- In silico search and biological validation of microRNAs related to drought response in peach and almond.Functional & integrative genomics · 2017Article
- Genome-wide screening and characterization of long non-coding RNAs involved in flowering development of trifoliate orange (Poncirus trifoliata L. Raf.).Scientific reports · 2017Article
- High throughput deep degradome sequencing reveals microRNAs and their targets in response to drought stress in mulberry (Morus alba).PloS one · 2017Article
- MicroRNA-Mediated Gene Silencing in Plant Defense and Viral Counter-Defense.Frontiers in microbiology · 2017Review
- Identification and characterization of microRNAs expressed in the African malaria vector Anopheles funestus life stages using high throughput sequencing.Malaria journal · 2016Article
- Integration of small RNAs, degradome and transcriptome sequencing in hyperaccumulator Sedum alfredii uncovers a complex regulatory network and provides insights into cadmium phytoremediation.Plant biotechnology journal · 2016Article
- Comparative Analysis of miRNAs and Their Target Transcripts between a Spontaneous Late-Ripening Sweet Orange Mutant and Its Wild-Type Using Small RNA and Degradome Sequencing.Frontiers in plant science · 2016Article
- Novel and conserved heat-responsive microRNAs in wheat (Triticum aestivum L.).Functional & integrative genomics · 2015Article
- High-Throughput Sequencing Reveals Diverse Sets of Conserved, Nonconserved, and Species-Specific miRNAs in Jute.International journal of genomics · 2015Article
- Genome-wide comparison of microRNAs and their targeted transcripts among leaf, flower and fruit of sweet orange.BMC genomics · 2014Article
- Review
- Transcriptome/Degradome-wide discovery of microRNAs and transcript targets in two Paulownia australis genotypes.PloS one · 2014Article
- A genome-wide perspective of miRNAome in response to high temperature, salinity and drought stresses in Brassica juncea (Czern) L.PloS one · 2014Article
- Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon.Genome biology · 2013Article
Corrections and comments
- Erratum issued
Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
To identify novel as well as conserved miRNAs in citrus, deep sequencing of small RNA library combined with microarray was performed in precocious trifoliate orange (an early flowering mutant of trifoliate orange, Poncirus trifoliata L. Raf.), resulting in the obtainment of a total of 114 conserved miRNAs belonging to 38 families and 155 novel miRNAs. The miRNA star sequences of 39 conserved miRNAs and 27 novel miRNAs were also discovered among newly identified miRNAs, providing additional evidence for the existence of miRNAs. Through degradome sequencing, 172 and 149 genes were identified as targets of conserved miRNAs and novel miRNAs, respectively. GO and KEGG annotation revealed that high ranked miRNA-target genes were those implicated in biological and metabolic processes. To characterize those miRNAs expressed at the juvenile and adult development stages of citrus, further analysis on the expression profiles of these miRNAs through hybridizing the commercial microarray and real-time PCR was performed. The results revealed that some miRNAs were down-regulated at adult stage compared with juvenile stage. Detailed comparison of the expression patterns of some miRNAs and corresponding target genes revealed the negative correlation between them, while few of them are positively correlated.
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