Evidence map›Paper›PMID 21795643›Full record

ArticleAmerican journal of physiology. Renal physiology2011

Role of AUF1 and HuR in the pH-responsive stabilization of phosphoenolpyruvate carboxykinase mRNA in LLC-PK₁-F⁺ cells.

Judy Mufti, Sachin Hajarnis, Kelly Shepardson, Lakshmi Gummadi, Lynn Taylor, Norman P Curthoys

Open access · greenAbstract read
In one paragraph

Article in American journal of physiology. Renal physiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Mechanisms of Metabolic Acidosis-Induced Kidney Injury in Chronic Kidney Disease.Journal of the American Society of Nephrology : JASN · 2020
    Article
  3. Proximal tubule function and response to acidosis.Clinical journal of the American Society of Nephrology : CJASN · 2014
    Review
  4. Review
  5. Expression of glutamine transporter Slc38a3 (SNAT3) during acidosis is mediated by a different mechanism than tissue-specific expression.Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology · 2014
    Article
  6. Article
  7. Renal ammonia metabolism and transport.Comprehensive Physiology · 2013
    Review
  8. Article
  9. Molecular mechanisms of acid-base sensing by the kidney.Journal of the American Society of Nephrology : JASN · 2012
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Judy MuftiDepartment of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, Colorado 80523-1870, USA.
Sachin Hajarnis
Kelly Shepardson
Lakshmi Gummadi
Lynn Taylor
Norman P Curthoys
Colorado State University · US

Funding

CONTROL OF RENAL GLUTAMINASE INDUCTION DURING ACIDOSISR01DK037124 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI CURTHOYS, NORMAN P. · 1987 to 2012
$2.7M
Regulation of Renal PEPCK Gene ExpressionR01DK043704 · NIDDK · COLORADO STATE UNIVERSITY-FORT COLLINS · PI CURTHOYS, NORMAN P. · 1991 to 2008
$1.6M
NIDDK NIH HHS DK-37124NIDDK NIH HHS DK-43704
6 · The paper itself

Abstract

Onset of metabolic acidosis leads to a rapid and pronounced increase in expression of phosphoenolpyruvate carboxykinase (PEPCK) in rat renal proximal convoluted tubules. This adaptive response is modeled by treating a clonal line of porcine LLC-PK(1)-F(+) cells with an acidic medium (pH 6.9, 9 mM HCO(3)(-)). Measurement of the half-lives of PEPCK mRNA in cells treated with normal (pH 7.4, 26 mM HCO(3)(-)) and acidic medium established that the observed increase is due in part to stabilization of the PEPCK mRNA. The pH-responsive stabilization was reproduced in a Tet-responsive chimeric reporter mRNA containing the 3'-UTR of PEPCK mRNA. This response was lost by mutation of a highly conserved AU sequence that binds AUF1 and is the primary element that mediates the rapid turnover of PEPCK mRNA. However, siRNA knockdown of AUF1 had little effect on the basal levels and the pH-responsive increases in PEPCK mRNA and protein. Electrophoretic mobility shift assays established that purified recombinant HuR, another AU element binding protein, also binds with high affinity and specificity to multiple sites within the final 92-nucleotides of the 3'-UTR of the PEPCK mRNA, including the highly conserved AU-rich element. siRNA knockdown of HuR caused pronounced decreases in basal expression and the pH-responsive increases in PEPCK mRNA and protein. Therefore, basal expression and the pH-responsive stabilization of PEPCK mRNA in LLC-PK(1)-F(+) cells, and possibly in the renal proximal tubule, may require the remodeling of HuR and AUF1 binding to the elements that mediate the rapid turnover of PEPCK mRNA.

Indexed as

3' Untranslated RegionsAnimalsAntibiotics, AntineoplasticBase SequenceBlotting, WesternDactinomycinDoxorubicinELAV ProteinsElectrophoretic Mobility Shift AssayHeterogeneous-Nuclear Ribonucleoprotein DHeterogeneous Nuclear Ribonucleoprotein D0Hydrogen-Ion ConcentrationKidneyLLC-PK1 CellsMiceMolecular Sequence Data3' Untranslated RegionsAntibiotics, AntineoplasticDactinomycinDoxorubicinELAV ProteinsHeterogeneous-Nuclear Ribonucleoprotein DHeterogeneous Nuclear Ribonucleoprotein D0Hnrnpd protein, ratHnrpd protein, mousePhosphoenolpyruvate Carboxykinase (GTP)Recombinant ProteinsRNA, MessengerRNA, Small Interfering

Identifiers

PMID21795643
PMCPMC3213904
OpenAlexW2104528612

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.