Evidence map›Paper›PMID 21795592›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2011

A SOCS-1 promoter variant is associated with total serum IgE levels.

Justin Mostecki, Suzanne L Cassel, Walter T Klimecki, Debra A Stern, Judit Knisz, Sachiyo Iwashita, Penelope Graves, Rachel L Miller, Maartje van Peer, Marilyn Halonen and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.1field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Negative Regulation of Cytokine Signaling in Immunity.Cold Spring Harbor perspectives in biology · 2018
    Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. ERK1 is important for Th2 differentiation and development of experimental asthma.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2012
    Article
  10. SOCS, Inflammation, and Autoimmunity.Frontiers in immunology · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Justin MosteckiDepartment of Microbiology, Columbia University, New York, NY 10032, USA.
Suzanne L Cassel
Walter T Klimecki
Debra A Stern
Judit Knisz
Sachiyo Iwashita
Penelope Graves
Rachel L Miller
Maartje van Peer
Marilyn Halonen
Fernando D Martinez
Donata Vercelli
Paul B Rothman
University of Iowa · USArizona Science Center · USColumbia University · USUniversity of Arizona · US

Funding

Role of SOCS-1 in Regulation of IgER01AI077516 · NIAID · UNIVERSITY OF IOWA · PI ROTHMAN, PAUL B · 2009 to 2010
$750k
Role of Lung Inflammation in Th2 PrimingK08AI067736 · NIAID · YALE UNIVERSITY · PI CASSEL, SUZANNE L. · 2007 to 2011
$603k
NIAID NIH HHS K08 AI067736NIAID NIH HHS R01 AI077516
6 · The paper itself

Abstract

SOCS-1 is a critical regulator of multiple signaling pathways, including those activated by cytokines that regulate Ig H chain class switching to IgE. Analysis of mice with mutations in the SOCS-1 gene demonstrated that IgE levels increase with loss of SOCS-1 alleles. This suggested that overall SOCS-1 acts as an inhibitor of IgE expression in vivo. A genetic association study was performed in 474 children enrolled in the Tucson Children's Respiratory Study to determine if genetic variation in the SOCS-1 locus correlates with altered levels of IgE. Carriers of the C-allele for a novel, 3' genomic single nucleotide polymorphism (SNP) in the SOCS-1 gene (SOCS1+1125G > C; rs33932899) were found to have significantly lower levels of serum IgE compared with those of homozygotes for the G-allele. Analysis demonstrated that the SOCS1+1125G > C SNP was in complete linkage disequilibrium with an SNP at position SOCS1-820G > T (rs33977706) of the SOCS-1 promoter. Carriers of the T-allele at the SOCS1-820G > T were also found to be associated with the decreased IgE. The promoter SNP increased transcriptional activity of the SOCS-1 promoter in reporter assays and human B cells. Consistent with this observation, the presence of this polymorphism within the promoter abolished binding of yin yang-1, which is identified as a negative regulator of SOCS-1 transcriptional activity. These data suggest that genetic variation in the SOCS-1 promoter may affect IgE production.

Indexed as

AnimalsBase SequenceChildElectrophoretic Mobility Shift AssayEnzyme-Linked Immunosorbent AssayGene Expression RegulationGenome-Wide Association StudyGenotypeHumansImmunoglobulin ELinkage DisequilibriumMiceMice, KnockoutMolecular Sequence DataPolymorphism, Single NucleotidePromoter Regions, GeneticImmunoglobulin ESOCS1 protein, humanSuppressor of Cytokine Signaling 1 ProteinSuppressor of Cytokine Signaling Proteins

Identifiers

PMID21795592
PMCPMC3159751
OpenAlexW2143357614

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.