ArticleJournal of biomedicine & biotechnology2011
Differential gene expression in sugarcane in response to challenge by fungal pathogen Ustilago scitaminea revealed by cDNA-AFLP.
Article in Journal of biomedicine & biotechnology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
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Who cites it
16 citing papers in PubMed.
- Screening of sugarcane germplasm against Sporisorium scitamineum and its effects on setts germination and tillering.Scientific reports · 2024Article
- Transcriptomic and Proteomic Landscape of Sugarcane Response to Biotic and Abiotic Stressors.International journal of molecular sciences · 2023Review
- Sugarcane Smut: Current Knowledge and the Way Forward for Management.Journal of fungi (Basel, Switzerland) · 2021Review
- Genome-wide alternative splicing landscapes modulated by biotrophic sugarcane smut pathogen.Scientific reports · 2019Article
- Identification and evaluation of PCR reference genes for host and pathogen in sugarcane-Sporisorium scitamineum interaction system.BMC genomics · 2018Article
- Plant jasmonate ZIM domain genes: shedding light on structure and expression patterns of JAZ gene family in sugarcane.BMC genomics · 2017Article
- Metabolome Dynamics of Smutted Sugarcane Reveals Mechanisms Involved in Disease Progression and Whip Emission.Frontiers in plant science · 2017Article
- Comparative proteomics reveals that central metabolism changes are associated with resistance against Sporisorium scitamineum in sugarcane.BMC genomics · 2016Article
- RNAseq Transcriptional Profiling following Whip Development in Sugarcane Smut Disease.PloS one · 2016Article
- Complete Genome Sequence of Sporisorium scitamineum and Biotrophic Interaction Transcriptome with Sugarcane.PloS one · 2015Article
- ScChi, encoding an acidic class III chitinase of sugarcane, confers positive responses to biotic and abiotic stresses in sugarcane.International journal of molecular sciences · 2014Article
- A global view of transcriptome dynamics during Sporisorium scitamineum challenge in sugarcane by RNA-Seq.PloS one · 2014Article
- Biogeographical variation and population genetic structure of Sporisorium scitamineum in Mainland China: insights from ISSR and SP-SRAP markers.TheScientificWorldJournal · 2014Article
- A TaqMan real-time PCR assay for detection and quantification of Sporisorium scitamineum in sugarcane.TheScientificWorldJournal · 2013Article
- Transcriptome profile analysis of sugarcane responses to Sporisorium scitaminea infection using Solexa sequencing technology.BioMed research international · 2013Article
- cDNA-SRAP and its application in differential gene expression analysis: a case study in Erianthus arundinaceum.Journal of biomedicine & biotechnology · 2012Article
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Authors and funding
5 authors.
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Abstract
Differential gene expression in sugarcane during sugarcane-Ustilago scitaminea interaction was conducted in a smut-resistant genotype. Using cDNA-AFLP along with silver staining, a total of 136 transcript-derived fragments (TDFs) were found to be differentially expressed in response to challenge by U. scitaminea. Forty TDFs, 34 newly induced plus six with obvious upregulated expression after infection, were sequenced and validated by RT-PCR analysis. These results demonstrated that the expression of 37 out of these TDFs in RT-PCR analysis was consistent with that in cDNA-AFLP analysis. Based on BlastX in NCBI, 28 TDFs were assumed to function in sugarcane under U. scitaminea stress. Analysis of expression profile of three TDFs revealed that they responded differently after infection with U. scitaminea, and the transcription was significantly enhanced. The response of two TDFs, SUC06 and SUC09, occurred before that of SUC10. This study enriches our knowledge of the molecular basis for sugarcane response to U. scitaminea infection.
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