Evidence map›Paper›PMID 21789242›Full record

ArticlePloS one2011

Adaptative potential of the Lactococcus lactis IL594 strain encoded in its 7 plasmids.

Roman K Górecki, Anna Koryszewska-Bagińska, Marcin Gołębiewski, Joanna Żylińska, Marcin Grynberg, Jacek K Bardowski

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
5.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 45 citations in OpenAlex.

  1. Review
  2. Article
  3. A Plasmid-Encoded Surface Polysaccharide Partly BlocksInternational journal of molecular sciences · 2025
    Article
  4. Polar-Region Soils as Novel Reservoir of Lactic Acid Bacteria from the GenusInternational journal of molecular sciences · 2024
    Article
  5. Article
  6. The Presence of Plasmids inInternational journal of molecular sciences · 2023
    Article
  7. Article
  8. TheFrontiers in microbiology · 2019
    Article
  9. Comparative Genome Analysis ofFrontiers in microbiology · 2019
    Article
  10. Article
  11. Article
  12. Article
  13. Genome Analysis ofFrontiers in microbiology · 2018
    Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Roman K GóreckiInstitute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland.
Anna Koryszewska-Bagińska
Marcin Gołębiewski
Joanna Żylińska
Marcin Grynberg
Jacek K Bardowski
Institute of Biochemistry and Biophysics, Polish Academy of Sciences · PLNicolaus Copernicus University · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The extrachromosomal gene pool plays a significant role both in evolution and in the environmental adaptation of bacteria. The L. lactis subsp. lactis IL594 strain contains seven plasmids, named pIL1 to pIL7, and is the parental strain of the plasmid-free L. lactis IL1403, which is one of the best characterized lactococcal strains of LAB. Complete nucleotide sequences of pIL1 (6,382 bp), pIL2 (8,277 bp), pIL3 (19,244 bp), pIL4 (48,979), pIL5 (23,395), pIL6 (28,435 bp) and pIL7 (28,546) were established and deposited in the generally accessible database (GeneBank). Nine highly homologous repB-containing replicons, belonging to the lactococcal theta-type replicons, have been identified on the seven plasmids. Moreover, a putative region involved in conjugative plasmid mobilization was found on four plasmids, through identification of the presence of mob genes and/or oriT sequences. Detailed bioinformatic analysis of the plasmid nucleotide sequences provided new insight into the repertoire of plasmid-encoded functions in L. lactis, and indicated that plasmid genes from IL594 strain can be important for L. lactis adaptation to specific environmental conditions (e.g. genes coding for proteins involved in DNA repair or cold shock response) as well as for technological processes (e.g. genes encoding citrate and lactose utilization, oligopeptide transport, restriction-modification system). Moreover, global gene analysis indicated cooperation between plasmid- and chromosome-encoded metabolic pathways.

Indexed as

Adaptation, PhysiologicalBacterial ProteinsBase SequenceCarbohydrate MetabolismCarboxylic AcidsConjugation, GeneticDNA DamageDNA RepairDNA ReplicationDNA Restriction-Modification EnzymesGenes, BacterialHydrogen-Ion ConcentrationLactococcus lactisMolecular Sequence DataPhysical Chromosome MappingPlasmidsBacterial ProteinsCarboxylic AcidsDNA Restriction-Modification Enzymes

Identifiers

PMID21789242
PMCPMC3138775
OpenAlexW1983869985

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.