Evidence map›Paper›PMID 21788519›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

High nitrogen insensitive 9 (HNI9)-mediated systemic repression of root NO3- uptake is associated with changes in histone methylation.

Thomas Widiez, El Sayed El Kafafi, Thomas Girin, Alexandre Berr, Sandrine Ruffel, Gabriel Krouk, Alice Vayssières, Wen-Hui Shen, Gloria M Coruzzi, Alain Gojon and 1 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  13. CG hypermethylation of theHorticulture research · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Thomas WidiezBiochimie et Physiologie Moléculaire des Plantes, Unité Mixte de Recherche 5004, Institut National de la Recherche Agronomique-Centre National de la Recherche Scientifique-Sup Agro-UM2, Institut de Biologie Intégrative des Plantes, F-34060 Montpellier, France.
El Sayed El Kafafi
Thomas Girin
Alexandre Berr
Sandrine Ruffel
Gabriel Krouk
Alice Vayssières
Wen-Hui Shen
Gloria M Coruzzi
Alain Gojon
Marc Lepetit

Funding

REGULATION OF AMINO ACID BIOSYNTHESIS GENES IN PLANTSR01GM032877 · NIGMS · ROCKEFELLER UNIVERSITY · PI CORUZZI, GLORIA · 1985 to 2012
$4.8M
NIGMS NIH HHS GM032877NIGMS NIH HHS R01 GM032877
6 · The paper itself

Abstract

In plants, root nitrate uptake systems are under systemic feedback repression by the N satiety of the whole organism, thus adjusting the N acquisition capacity to the N demand for growth; however, the underlying molecular mechanisms are largely unknown. We previously isolated the Arabidopsis high nitrogen-insensitive 9-1 (hni9-1) mutant, impaired in the systemic feedback repression of the root nitrate transporter NRT2.1 by high N supply. Here, we show that HNI9 encodes Arabidopsis INTERACT WITH SPT6 (AtIWS1), an evolutionary conserved component of the RNA polymerase II complex. HNI9/AtIWS1 acts in roots to repress NRT2.1 transcription in response to high N supply. At a genomic level, HNI9/AtIWS1 is shown to play a broader role in N signaling by regulating several hundred N-responsive genes in roots. Repression of NRT2.1 transcription by high N supply is associated with an HNI9/AtIWS1-dependent increase in histone H3 lysine 27 trimethylation at the NRT2.1 locus. Our findings highlight the hypothesis that posttranslational chromatin modifications control nutrient acquisition in plants.

Indexed as

Anion Transport ProteinsArabidopsisArabidopsis ProteinsChromatinGene Expression Regulation, PlantGenes, PlantHistonesMethylationNitratesNitrogenPlant RootsPlant ShootsPromoter Regions, GeneticProtein Processing, Post-TranslationalRNA Polymerase IITranscription FactorsAnion Transport ProteinsArabidopsis ProteinsChromatinHistonesIWS1 protein, ArabidopsisNitratesNitrogenNRT2.1 protein, ArabidopsisRNA Polymerase IITranscription Factors

Identifiers

PMID21788519
PMCPMC3156160

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.