Evidence map›Paper›PMID 21788475›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

Electronic properties of the highly ruffled heme bound to the heme degrading enzyme IsdI.

Shin-ichi J Takayama, Georgia Ukpabi, Michael E P Murphy, A Grant Mauk

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 63 citations in OpenAlex.

  1. The roles of Asn7 and Trp67 in tuning the ferryl haem form ofDalton transactions (Cambridge, England : 2003) · 2026
    Article
  2. Stabilization of the Ferryl═Oxoheme Form ofJournal of the American Chemical Society · 2025
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  12. Unique coupling of mono- and dioxygenase chemistries in a single active site promotes heme degradation.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  13. Article
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  15. Hydrogen bond donation to the heme distal ligand of Staphylococcus aureus IsdG tunes the electronic structure.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2015
    Article
  16. Article
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  18. Heme oxygenation and the widening paradigm of heme degradation.Archives of biochemistry and biophysics · 2014
    Review
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Shin-ichi J TakayamaDepartment of Biochemistry and Molecular Biology, University of British Columbia Centre for Blood Research, Life Sciences Centre, University of British Columbia, Vancouver, BC, Canada V6T 1Z3.
Georgia Ukpabi
Michael E P Murphy
A Grant Mauk
University of British Columbia · CA

Funding

Biotechnology and Biological Sciences Research Council MOP-49597
6 · The paper itself

Abstract

IsdI, a heme-degrading protein from Staphylococcus aureus, binds heme in a manner that distorts the normally planar heme prosthetic group to an extent greater than that observed so far for any other heme-binding protein. To understand better the relationship between this distinct structural characteristic and the functional properties of IsdI, spectroscopic, electrochemical, and crystallographic results are reported that provide evidence that this heme ruffling is essential to the catalytic activity of the protein and eliminates the need for the water cluster in the distal heme pocket that is essential for the activity of classical heme oxygenases. The lack of heme orientational disorder in (1)H-NMR spectra of the protein argues that the catalytic formation of β- and δ-biliverdin in nearly equal yield results from the ability of the protein to attack opposite sides of the heme ring rather than from binding of the heme substrate in two alternative orientations.

Indexed as

ElectronsAbsorptionBacterial ProteinsCatalytic DomainCrystallography, X-RayCyanidesElectrochemical TechniquesHemeHydrogen-Ion ConcentrationIronMagnetic Resonance SpectroscopyMixed Function OxygenasesProtein BindingStaphylococcus aureusBacterial ProteinsCyanidesHemeIronIsdI protein, Staphylococcus aureusMixed Function Oxygenases

Identifiers

PMID21788475
PMCPMC3156149
OpenAlexW2150300764

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.