Evidence map›Paper›PMID 21788335›Full record

ArticleRNA (New York, N.Y.)2011

Defining the Mer1 and Nam8 meiotic splicing regulons by cDNA rescue.

Zhicheng R Qiu, Beate Schwer, Stewart Shuman

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Zhicheng R QiuMolecular Biology Program, Sloan-Kettering Institute, New York, New York 10065, USA.
Beate Schwer
Stewart Shuman
Kettering University · USCornell University · US

Funding

mRNA Capping EnzymesR01GM052470 · NIGMS · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SCHWER, BEATE, SHUMAN, STEWART H · 1995 to 2019
$9.9M
STRUCTURE/FUNCTION ANALYSIS OF SPLICEOSOMAL ATPASESR01GM050288 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI SCHWER, BEATE · 1994 to 2011
$3.9M
NIGMS NIH HHS GM50288NIGMS NIH HHS GM52470NIGMS NIH HHS R01 GM050288NIGMS NIH HHS R01 GM052470
6 · The paper itself

Abstract

Meiosis-specific pre-mRNA splicing in budding yeast embraces multiple pre-mRNA targets grouped into regulons defined by their genetic requirements for vegetatively optional splicing factors (e.g., splicing enhancer Mer1 and the U1 snRNP subunit Nam8) or snRNA modifications (trimethylguanosine caps). Here, we genetically demarcate a complete meiotic splicing regulon by the criterion of cDNA bypass of the requirement for the governing splicing regulators to execute sporulation. We thereby show that the Mer1 and Nam8 regulons embrace four essential pre-mRNAs: MER2, MER3, SPO22, and AMA1. Whereas Nam8 also regulates PCH2 splicing, PCH2 cDNA is not needed for sporulation by nam8Δ diploids. Our results show that there are no essential intron-containing RNAs missing from the known roster of Mer1 and Nam8 targets. Nam8 is composed of three RRM domains, flanked by N-terminal leader and C-terminal tail segments. We find that the RRM2 and RRM3 domains, and their putative RNA-binding sites, are essential for yeast sporulation, whereas the leader, tail, and RRM1 modules are not.

Indexed as

MeiosisRNA SplicingAmino Acid SequenceCdc20 ProteinsCell Cycle ProteinsChromosomal Proteins, Non-HistoneDNA, ComplementaryDNA HelicasesGene Expression Regulation, FungalIntronsMolecular Sequence DataMutationRegulonRibonucleoproteins, Small NuclearRibonucleoprotein, U1 Small NuclearRNA-Binding ProteinsAma1 protein, S cerevisiaeCdc20 ProteinsCell Cycle ProteinsChromosomal Proteins, Non-HistoneDNA, ComplementaryDNA HelicasesHFM1 protein, S cerevisiaeMER1 protein, S cerevisiaeNAM8 protein, S cerevisiaeREC107 protein, S cerevisiaeRibonucleoproteins, Small NuclearRibonucleoprotein, U1 Small NuclearRNA-Binding ProteinsRNA PrecursorsRNA, Small NuclearSaccharomyces cerevisiae ProteinsSpo22 protein, S cerevisiae

Identifiers

PMID21788335
PMCPMC3162330
OpenAlexW2161445551

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.