Evidence map›Paper›PMID 21787766›Full record

ArticleDevelopmental biology2011

miR-196 regulates axial patterning and pectoral appendage initiation.

Xinjun He, Yi-Lin Yan, Johann K Eberhart, Amaury Herpin, Toni U Wagner, Manfred Schartl, John H Postlethwait

Abstract read
In one paragraph

Article in Developmental biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed.

  1. Review
  2. The expanding roles of Nr6a1 in development and evolution.Frontiers in cell and developmental biology · 2024
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. A novel conserved enhancer at zebrafish zic3 and zic6 loci drives neural expression.Developmental dynamics : an official publication of the American Association of Anatomists · 2019
    Article
  11. Article
  12. Inventory of European Sea Bass (Frontiers in genetics · 2019
    Article
  13. Review
  14. Mudskippers and Their Genetic Adaptations to an Amphibious Lifestyle.Animals : an open access journal from MDPI · 2018
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Xinjun HeInstitute of Neuroscience, University of Oregon, Eugene, OR 97403, USA. xhe@uoneuro.uoregon.edu
Yi-Lin Yan
Johann K Eberhart
Amaury Herpin
Toni U Wagner
Manfred Schartl
John H Postlethwait

Funding

Zebrafish FacilityP01HD022486 · NICHD · UNIVERSITY OF OREGON · PI EISEN, JUDITH S · 1987 to 2017
$28.8M
RESOURCES FOR TELEOST GENE DUPLICATES AND HUMAN DISEASER01RR020833 · NCRR · UNIVERSITY OF OREGON · PI POSTLETHWAIT, JOHN H. · 2005 to 2011
$3.6M
Idenfication of miRNAs involved midfacial development and cleftingU01DE020076 · NIDCR · UNIVERSITY OF COLORADO DENVER · PI ARTINGER, KRISTIN, CLOUTHIER, DAVID E. · 2009 to 2013
$1.9M
NCRR NIH HHS 1 R01 RR020833NCRR NIH HHS R01 RR020833NICHD NIH HHS 5 P01 HD22486NICHD NIH HHS P01 HD022486NIDCR NIH HHS 1 U01 DE020076NIDCR NIH HHS U01 DE020076
6 · The paper itself

Abstract

Vertebrate Hox clusters contain protein-coding genes that regulate body axis development and microRNA (miRNA) genes whose functions are not yet well understood. We overexpressed the Hox cluster microRNA miR-196 in zebrafish embryos and found four specific, viable phenotypes: failure of pectoral fin bud initiation, deletion of the 6th pharyngeal arch, homeotic aberration and loss of rostral vertebrae, and reduced number of ribs and somites. Reciprocally, miR-196 knockdown evoked an extra pharyngeal arch, extra ribs, and extra somites, confirming endogenous roles of miR-196. miR-196 injection altered expression of hox genes and the signaling of retinoic acid through the retinoic acid receptor gene rarab. Knocking down rarab mimicked the pectoral fin phenotype of miR-196 overexpression, and reporter constructs tested in tissue culture and in embryos showed that the rarab 3'UTR is a miR-196 target for pectoral fin bud initiation. These results show that a Hox cluster microRNA modulates development of axial patterning similar to nearby protein-coding Hox genes, and acts on appendicular patterning at least in part by modulating retinoic acid signaling.

Indexed as

Animal FinsAnimalsBase SequenceBody PatterningBone and BonesBranchial RegionEmbryo, NonmammalianGene Expression Regulation, DevelopmentalGenomicsHomeodomain ProteinsMicroRNAsMolecular Sequence DataSignal TransductionTretinoinZebrafishZebrafish ProteinsHomeodomain ProteinsMicroRNAsMIRN196 microRNA, zebrafishTretinoinZebrafish Proteins

Identifiers

PMID21787766
PMCPMC3164755

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.