ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2011
SNP marker diversity in common bean (Phaseolus vulgaris L.).
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.
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Who cites it
60 citing papers in PubMed.
- Development of Genomic SSR Markers to Reveal the Genetic Diversity in Trichosanthes kirilowii from Korea.Molecular biotechnology · 2026Article
- Genomic Prediction of Adaptation in Common Bean (International journal of molecular sciences · 2025Article
- Genome-Wide Association Study and Genomic Prediction of Fusarium Wilt Resistance in Common Bean Core Collection.International journal of molecular sciences · 2023Article
- Identification of QTLs and Putative Candidate Genes for Plant Architecture of Lotus Revealed by Regional Association Mapping.Plants (Basel, Switzerland) · 2023Article
- Genome-wide association mapping for component traits of drought tolerance in dry beans (Phaseolus vulgaris L.).PloS one · 2023Article
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- Inheritance of Yield Components and Morphological Traits in Avocado cv. Hass From "Criollo" "Elite Trees"Frontiers in plant science · 2022Article
- Genome-Environment Associations, an Innovative Tool for Studying Heritable Evolutionary Adaptation in Orphan Crops and Wild Relatives.Frontiers in genetics · 2022Review
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- Review
- Article
- Assessment of the Origin and Diversity of Croatian Common Bean Germplasm Using Phaseolin Type, SSR and SNP Markers and Morphological Traits.Plants (Basel, Switzerland) · 2021Article
- Population structure, genetic diversity and genomic selection signatures among a Brazilian common bean germplasm.Scientific reports · 2021Article
- Genome-Wide Association Study and Genomic Prediction for Soybean Cyst Nematode Resistance in USDA Common Bean (Frontiers in plant science · 2021Article
- Associated SNPs, Heritabilities, Trait Correlations, and Genomic Breeding Values for Resistance in Snap Beans (Frontiers in plant science · 2021Article
- Identification and Validation of a Core Single-Nucleotide Polymorphism Marker Set for Genetic Diversity Assessment, Fingerprinting Identification, and Core Collection Development in Bottle Gourd.Frontiers in plant science · 2021Article
- Identification of the 'Haryejosaeng' mandarin cultivar by multiplex PCR-based SNP genotyping.Molecular biology reports · 2020Article
- Article
- Genetic diversity and structure of landrace accessions, elite lineages and cultivars of common bean estimated with SSR and SNP markers.Molecular biology reports · 2020Article
- Article
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Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Single nucleotide polymorphism (SNP) markers have become a genetic technology of choice because of their automation and high precision of allele calls. In this study, our goal was to develop 94 SNPs and test them across well-chosen common bean (Phaseolus vulgaris L.) germplasm. We validated and accessed SNP diversity at 84 gene-based and 10 non-genic loci using KASPar technology in a panel of 70 genotypes that have been used as parents of mapping populations and have been previously evaluated for SSRs. SNPs exhibited high levels of genetic diversity, an excess of middle frequency polymorphism, and a within-genepool mismatch distribution as expected for populations affected by sudden demographic expansions after domestication bottlenecks. This set of markers was useful for distinguishing Andean and Mesoamerican genotypes but less useful for distinguishing within each gene pool. In summary, slightly greater polymorphism and race structure was found within the Andean gene pool than within the Mesoamerican gene pool but polymorphism rate between genotypes was consistent with genepool and race identity. Our survey results represent a baseline for the choice of SNP markers for future applications because gene-associated SNPs could themselves be causative SNPs for traits. Finally, we discuss that the ideal genetic marker combination with which to carry out diversity, mapping and association studies in common bean should consider a mix of both SNP and SSR markers.
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