Evidence map›Paper›PMID 21784893›Full record

ArticleJournal of the American Society of Nephrology : JASN2011

Identification of the nephropathy-susceptibility locus HIVAN4.

Sindhuri Prakash, Natalia Papeta, Roel Sterken, Zongyu Zheng, Robert L Thomas, Zhenzhen Wu, John R Sedor, Vivette D D'Agati, Leslie A Bruggeman, Ali G Gharavi

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Society of Nephrology : JASN, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Review
  3. GWAS in Mice Maps Susceptibility to HIV-Associated Nephropathy to theJournal of the American Society of Nephrology : JASN · 2022
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Genetic association and gene-gene interaction analyses in African American dialysis patients with nondiabetic nephropathy.American journal of kidney diseases : the official journal of the National Kidney Foundation · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Sindhuri PrakashDepartment of Medicine, Columbia University College of Physicians and Surgeons, New York, New York 10032, USA.
Natalia Papeta
Roel Sterken
Zongyu Zheng
Robert L Thomas
Zhenzhen Wu
John R Sedor
Vivette D D'Agati
Leslie A Bruggeman
Ali G Gharavi
Columbia University · USCase Western Reserve University · USMetroHealth Medical Center · US

Funding

WG3: HIV, Co-infections and Co-morbiditiesP30AI036219 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI Sharon L. Hillier, JONATHAN KARN · 1994 to 2026
$50.0M
Translational Biomarker Analytical Core (TBAC)P30DK063608 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI DOMENICO ACCILI · 2003 to 2026
$36.7M
CWRU NEPHROLOGY TRAINING PROGRAMT32DK007470 · NIDDK · CASE WESTERN RESERVE UNIVERSITY · PI SEDOR, JOHN R. · 1986 to 2019
$2.9M
Identifying the earliest events in HIV-1 associated nephropathy via genome-wideR01DK087626 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GHARAVI, ALI G · 2010 to 2014
$1.7M
Transcriptional regulation in chronic renal disease pathogenesisR01DK061395 · NIDDK · CASE WESTERN RESERVE UNIVERSITY · PI BRUGGEMAN, LESLIE A · 2001 to 2008
$1.6M
NHGRI NIH HHS HHSN268200782096CNIAID NIH HHS AI36219NIAID NIH HHS P30 AI036219NIDDK NIH HHS DK007470NIDDK NIH HHS DK061395NIDDK NIH HHS DK087626NIDDK NIH HHS P30 DK063608NIDDK NIH HHS P30-DK63608NIDDK NIH HHS R01 DK061395NIDDK NIH HHS R01 DK087626NIDDK NIH HHS T32 DK007470
6 · The paper itself

Abstract

HIVAN1, HIVAN2, and HIVAN3 are nephropathy-susceptibility loci previously identified in the HIV-1 transgenic mouse, a model of collapsing glomerulopathy. The HIVAN1 and HIVAN2 loci modulate expression of Nphs2, which encodes podocin and several other podocyte-expressed genes. To identify additional loci predisposing to nephropathy, we performed a genome-wide scan in 165 backcross mice generated between the nephropathy-sensitive HIV-1-transgenic FVB/NJ (TgFVB) strain and the resistant Balb/cJ (BALB) strain. We identified a major susceptibility locus (HIVAN4) on chromosome 6 G3-F3, with BALB alleles conferring a twofold reduction in severity (peak LOD score = 4.0). Similar to HIVAN1 and HIVAN2, HIVAN4 modulated expression of Nphs2, indicating a common pathway underlying these loci. We independently confirmed the HIVAN4 locus in a sister TgFVB colony that experienced a dramatic loss of nephropathy subsequent to a breeding bottleneck. In this low-penetrance line, 3% of the genome was admixed with BALB alleles, suggesting a remote contamination event. The admixture localized to discrete segments on chromosome 2 and at the HIVAN4 locus. HIVAN4 candidate genes include killer lectin-like receptor genes as well as A2m and Ptpro, whose gene products are enriched in the glomerulus and interact with HIV-1 proteins. In summary, these data identify HIVAN4 as a major quantitative trait locus for nephropathy and a transregulator of Nphs2. Furthermore, similar selective breeding strategies may help identify further susceptibility loci.

Indexed as

Genetic Predisposition to DiseaseAllelesAnimalsChromosome MappingCrosses, GeneticFemaleHIV-1Intracellular Signaling Peptides and ProteinsKidney DiseasesLod ScoreMaleMembrane ProteinsMiceMice, Inbred BALB CMice, TransgenicModels, GeneticIntracellular Signaling Peptides and ProteinsMembrane ProteinsNPHS2 protein

Identifiers

PMID21784893
PMCPMC3148704
OpenAlexW2166703288

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.