Evidence map›Paper›PMID 21782429›Full record

ArticleBioorganic & medicinal chemistry letters2011

Fragment library screening reveals remarkable similarities between the G protein-coupled receptor histamine H₄ and the ion channel serotonin 5-HT₃A.

Mark H P Verheij, Chris de Graaf, Gerdien E de Kloe, Saskia Nijmeijer, Henry F Vischer, Rogier A Smits, Obbe P Zuiderveld, Saskia Hulscher, Linda Silvestri, Andrew J Thompson and 4 more

Abstract read
In one paragraph

Article in Bioorganic & medicinal chemistry letters, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Mark H P VerheijLeiden/Amsterdam Center of Drug Research, Division of Medicinal Chemistry, Faculty of Sciences, VU University Amsterdam, De Boelelaan 1083, 1081 HV Amsterdam, The Netherlands.
Chris de Graaf
Gerdien E de Kloe
Saskia Nijmeijer
Henry F Vischer
Rogier A Smits
Obbe P Zuiderveld
Saskia Hulscher
Linda Silvestri
Andrew J Thompson
Jacqueline E van Muijlwijk-Koezen
Sarah C R Lummis
Rob Leurs
Iwan J P de Esch

Funding

Wellcome TrustWellcome Trust 081925
6 · The paper itself

Abstract

A fragment library was screened against the G protein-coupled histamine H(4) receptor (H(4)R) and the ligand-gated ion channel serotonin 5-HT(3A) (5-HT(3A)R). Interestingly, significant overlap was found between H(4)R and 5-HT(3A)R hit sets. The data indicates that dual active H(4)R and 5 HT(3A)R fragments have a higher complexity than the selective compounds which has important implications for chemical genomics approaches. The results of our fragment-based library screening study illustrate similarities in ligand recognition between H(4)R and 5-HT(3A)R and have important consequences for selectivity profiling in ongoing drug discovery efforts on H(4)R and 5-HT(3A)R. The affinity profiles of our fragment screening studies furthermore match the chemical properties of the H(4)R and 5-HT(3A)R binding sites and can be used to define molecular interaction fingerprints to guide the in silico prediction of protein-ligand interactions and structure.

Indexed as

HEK293 CellsHumansModels, MolecularMolecular StructureOrganic ChemicalsReceptors, HistamineReceptors, Serotonin, 5-HT3Small Molecule LibrariesStructure-Activity RelationshipOrganic ChemicalsReceptors, HistamineReceptors, Serotonin, 5-HT3Small Molecule Libraries

Identifiers

PMID21782429
PMCPMC3235552

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.