Evidence map›Paper›PMID 21777454›Full record

ArticleMicrobial cell factories2011

Functional identification in Lactobacillus reuteri of a PocR-like transcription factor regulating glycerol utilization and vitamin B12 synthesis.

Filipe Santos, Jennifer K Spinler, Delphine M A Saulnier, Douwe Molenaar, Bas Teusink, Willem M de Vos, James Versalovic, Jeroen Hugenholtz

Open access · goldAbstract read
In one paragraph

Article in Microbial cell factories, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
5.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 48 citations in OpenAlex.

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  7. Constraint-based modeling in microbial food biotechnology.Biochemical Society transactions · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Filipe SantosCenter for Integrative Bioinformatics, Vrije Universiteit Amsterdam, Boelelaan1085, 1081 HV Amsterdam, The Netherlands.
Jennifer K Spinler
Delphine M A Saulnier
Douwe Molenaar
Bas Teusink
Willem M de Vos
James Versalovic
Jeroen Hugenholtz
Texas Children's Hospital · USVrije Universiteit Amsterdam · NLAmsterdam University of Applied Sciences · NLTiFN · NLWageningen University & Research · NL

Funding

Modulation of NF-kB Signaling by ImmunoprobioticsR01AT004326 · NCCIH · BAYLOR COLLEGE OF MEDICINE · PI VERSALOVIC, JAMES · 2008 to 2011
$1.8M
Intestinal Lactobacillus and Mucosal ImmunomodulationR01DK065075 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI VERSALOVIC, JAMES · 2007 to 2010
$1.3M
NCCIH NIH HHS R01 AT004326NIDDK NIH HHS R01DK065075
6 · The paper itself

Abstract

backgroundLactobacillus reuteri harbors the genes responsible for glycerol utilization and vitamin B12 synthesis within a genetic island phylogenetically related to gamma-Proteobacteria. Within this island, resides a gene (lreu_1750) that based on its genomic context has been suggested to encode the regulatory protein PocR and presumably control the expression of the neighboring loci. However, this functional assignment is not fully supported by sequence homology, and hitherto, completely lacks experimental confirmation.

resultsIn this contribution, we have overexpressed and inactivated the gene encoding the putative PocR in L. reuteri. The comparison of these strains provided metabolic and transcriptional evidence that this regulatory protein controls the expression of the operons encoding glycerol utilization and vitamin B12 synthesis.

conclusionsWe provide clear experimental evidence for assigning Lreu_1750 as PocR in Lactobacillus reuteri. Our genome-wide transcriptional analysis further identifies the loci contained in the PocR regulon. The findings reported here could be used to improve the production-yield of vitamin B12, 1,3-propanediol and reuterin, all industrially relevant compounds.

Indexed as

Amino Acid SequenceBacterial ProteinsGene Expression ProfilingGenetic LociGlyceraldehydeGlycerolHydrogen-Ion ConcentrationLimosilactobacillus reuteriMolecular Sequence DataPhylogenyPropanePropylene GlycolsSequence AlignmentTranscription FactorsVitamin B 121,3-propanediol3-hydroxypropionaldehydeBacterial ProteinsGlyceraldehydeGlycerolPropanePropylene GlycolsTranscription FactorsVitamin B 12

Identifiers

PMID21777454
PMCPMC3162504
OpenAlexW2100212552

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.