Evidence map›Paper›PMID 21776415›Full record

ArticleSmall GTPases2011

A common mechanism for protein cluster formation.

Andrew B Goryachev

Open access · hybridAbstract read
In one paragraph

Article in Small GTPases, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.1field-weighted citation impact, top 49% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author at 1 institution in 1 country.

Andrew B GoryachevCentre for Systems Biology; School of Biological Sciences; The University of Edinburgh; Edinburgh, UK.
University of Edinburgh · GB

Funding

Biotechnology and Biological Sciences Research Council BB/G001855/1
6 · The paper itself

Abstract

Polarized states on the membranes are characterized by focal accumulation of proteins and lipids at local concentrations far exceeding their levels typically found outside of these dense clusters. Principles of thermodynamics argue that formation and maintenance of such structures require continuous expenditure of cellular energy to combat the effect of molecular diffusion that relentlessly dissipates the clusters in favor of the spatially homogeneous state. Small GTPases are known to play a crucial role in the formation of several such polarized states. Their ability to consume stored energy and convert it into a potentially useful work by cyclically hydrolyzing GTP and coupling to various effectors in a nucleotide-dependent way, makes them eligible candidates to fulfill the requirements for the molecules involved in the mechanisms responsible for the maintenance of polarized states. Consistently, continuous nucleotide cycling of small GTPases has been found required for the emergence of structures in several well characterized cases. Despite this general awareness, the detailed molecular mechanisms remain largely unknown. In a recent study, not directly involving small GTPases, we proposed a mechanism explaining the emergence and maintenance of the stable cell-polarity landmark that manifests itself as a protein cluster positioned on the plasma membrane at the growing ends of fission yeast cells. Unexpectedly, this study has suggested a number of striking parallels with the mechanisms based on the activity of small GTPases. These findings highlight common design principles of cellular pattern-forming mechanisms that have been mixed and matched in various combinations in the course of evolution to achieve the same desired outcome-tightly controlled in space and time formation of dense protein clusters.

Identifiers

PMID21776415
PMCPMC3136944
OpenAlexW2103064119

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.