Evidence map›Paper›PMID 21775991›Full record

ArticleNature genetics2011

Analyses of X-linked and autosomal genetic variation in population-scale whole genome sequencing.

Srikanth Gottipati, Leonardo Arbiza, Adam Siepel, Andrew G Clark, Alon Keinan

Open access · greenAbstract read
In one paragraph

Article in Nature genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed, 1 pooled it
7.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 1 synthesis or guideline pooled it, 102 citations in OpenAlex.

  1. Pooled it
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  20. Genetic Diversity on the Sex Chromosomes.Genome biology and evolution · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Srikanth GottipatiDepartment of Biological Statistics and Computational Biology, Cornell University, Ithaca, New York, USA.
Leonardo Arbiza
Adam Siepel
Andrew G Clark
Alon Keinan
Cornell University · US

Funding

Population Genetic Inferences From Dense Genotype DataR01HG003229 · NHGRI · CORNELL UNIVERSITY ITHACA · PI BUSTAMANTE, CARLOS DANIEL, CLARK, ANDREW G · 2004 to 2013
$4.8M
Population Structure Admixture and Selection across the 1000 Genomes Data SetU01HG005715 · NHGRI · STANFORD UNIVERSITY · PI BUSTAMANTE, CARLOS DANIEL, CLARK, ANDREW G · 2010 to 2012
$1.1M
NHGRI NIH HHS R01 HG003229NHGRI NIH HHS U01 HG005715NHGRI NIH HHS U01-HG005715
6 · The paper itself

Abstract

The ratio of genetic diversity on chromosome X to that on the autosomes is sensitive to both natural selection and demography. On the basis of whole-genome sequences of 69 females, we report that whereas this ratio increases with genetic distance from genes across populations, it is lower in Europeans than in West Africans independent of proximity to genes. This relative reduction is most parsimoniously explained by differences in demographic history without the need to invoke natural selection.

Indexed as

Genetics, PopulationGenome, HumanChromosome MappingChromosomes, Human, XDemographyFemaleGenes, X-LinkedGenetic VariationHumansSelection, Genetic

Identifiers

PMID21775991
PMCPMC3145052
OpenAlexW2046218970

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.