Evidence map›Paper›PMID 21775986›Full record

ArticleNature2011

The landscape of recombination in African Americans.

Anjali G Hinch, Arti Tandon, Nick Patterson, Yunli Song, Nadin Rohland, Cameron D Palmer, Gary K Chen, Kai Wang, Sarah G Buxbaum, Ermeg L Akylbekova and 71 more

Abstract read
In one paragraph

Article in Nature, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 213 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
213citing papers in PubMed, 1 pooled it
14.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

213 citing papers in PubMed, 1 synthesis or guideline pooled it, 360 citations in OpenAlex.

  1. Pooled it
  2. Putative linkage signals identified for breast cancer in African American families.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2015
    Trial
  3. Article
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  10. Article
  11. Review
  12. Common and rare variant genetic contributions in African Americans with autism.medRxiv : the preprint server for health sciences · 2025
    Article
  13. Article
  14. Article
  15. Article
  16. Article
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  18. Article
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153 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

81 authors at 20 institutions in 2 countries.

Anjali G HinchWellcome Trust Centre for Human Genetics, Oxford University, Roosevelt Drive, Oxford OX3 7BN, UK.
Arti Tandon
Nick Patterson
Yunli Song
Nadin Rohland
Cameron D Palmer
Gary K Chen
Kai Wang
Sarah G Buxbaum
Ermeg L Akylbekova
Melinda C Aldrich
Christine B Ambrosone
Christopher Amos
Elisa V Bandera
Sonja I Berndt
Leslie Bernstein
William J Blot
Cathryn H Bock
Eric Boerwinkle
Qiuyin Cai
Neil Caporaso
Graham Casey
L Adrienne Cupples
Sandra L Deming
W Ryan Diver
Jasmin Divers
Myriam Fornage
Elizabeth M Gillanders
Joseph Glessner
Curtis C Harris
Jennifer J Hu
Sue A Ingles
William Isaacs
Esther M John
W H Linda Kao
Brendan Keating
Rick A Kittles
Laurence N Kolonel
Emma Larkin
Loic Le Marchand
Lorna H McNeill
Robert C Millikan
Adam Murphy
Solomon Musani
Christine Neslund-Dudas
Sarah Nyante
George J Papanicolaou
Michael F Press
Bruce M Psaty
Alex P Reiner
Stephen S Rich
Jorge L Rodriguez-Gil
Jerome I Rotter
Benjamin A Rybicki
Ann G Schwartz
Lisa B Signorello
Margaret Spitz
Sara S Strom
Michael J Thun
Margaret A Tucker
Zhaoming Wang
John K Wiencke
John S Witte
Margaret Wrensch
Xifeng Wu
Yuko Yamamura
Krista A Zanetti
Wei Zheng
Regina G Ziegler
Xiaofeng Zhu
Susan Redline
Joel N Hirschhorn
Brian E Henderson
Herman A Taylor
Alkes L Price
Hakon Hakonarson
Stephen J Chanock
Christopher A Haiman
James G Wilson
David Reich
Simon R Myers
Broad Institute · USNational Cancer Institute · USThe University of Texas MD Anderson Cancer Center · USUniversity of Southern California · USVanderbilt University · USChildren's Hospital of Philadelphia · USUniversity of Mississippi Medical Center · USUniversity of California, San Francisco · USAmerican Cancer Society · USDivision of Cancer Epidemiology and GeneticsHenry Ford Hospital · USJohns Hopkins University · USThe University of Texas Health Science Center at Houston · USUniversity of Oxford · GBBeckman Research InstituteBoston University · USBrigham and Women's Hospital · USCancer Center of Hawaii · USCancer Institute of Florida · USCancer Prevention Institute of California · US

Funding

Tumor Immunology and Microenvironment Research ProgramP30CA068485 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI MATTHEW J TYSKA · 1995 to 2026
$172.8M
Southern Community Cohort StudyR01CA092447 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI BLOT, WILLIAM J., ZHENG, WEI · 2001 to 2015
$74.0M
Tumor Biology and Microenvironment (Program 1)P30CA022453 · NCI · WAYNE STATE UNIVERSITY · PI PAUL M STEMMER · 1985 to 2026
$68.4M
Tissue Procurement & PathologyP50CA058223 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KATHERINE A. HOADLEY · 1992 to 2026
$59.3M
UNC-CH CENTER FOR ENVIRONMENTAL HEALTH &SUSCEPTIBILITYP30ES010126 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Melissa A. Troester · 2001 to 2026
$36.3M
Targeting Tumor Microenvironment-Induced Therapy Resistance in Prostate Cancer Bone MetastasisP50CA140388 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI LOGOTHETIS, CHRISTOPHER J., THOMPSON, TIMOTHY CHARLES · 2009 to 2022
$23.4M
GENETIC SUSCEPTIBILITY TO CANCER IN MULTIETHNIC COHORTSR01CA063464 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI HENDERSON, BRIAN E · 2001 to 2005
$23.2M
Multiethnic Cohort Study of Diet and CancerR37CA054281 · NCI · UNIVERSITY OF HAWAII AT MANOA · PI KOLONEL, LAURENCE N. · 2003 to 2012
$23.2M
CALIFORNIA'S PARTICIPATION IN THE NATIONAL CANCER PREVENTION AND CONTRO PROGRAMU58DP000807 · DP · PUBLIC HEALTH INSTITUTE · PI SNIPES, KURT P · 2007 to 2011
$22.5M
GENETIC EPIDEMIOLOGY OF MALIGNANT GLIOMAR01CA052689 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WIENCKE, JOHN K., WRENSCH, MARGARET R. · 1991 to 2015
$20.5M
Pilot Project ProgramP30ES007784 · NIEHS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI RICHIE, ELLEN R · 1996 to 2011
$16.4M
The Howard University SCORE Program Supplemental GrantS06GM008016 · NIGMS · HOWARD UNIVERSITY · PI TIZABI, YOUSEF · 1989 to 2009
$16.1M
Intramural NIH HHSNCCDPHP CDC HHS U58 DP000807NCI NIH HHS CA060691NCI NIH HHS CA092447NCI NIH HHS CA100374NCI NIH HHS CA100598NCI NIH HHS CA1116460NCI NIH HHS CA1116460S1NCI NIH HHS CA121197NCI NIH HHS CA121197S2NCI NIH HHS CA127219NCI NIH HHS CA1326792NCI NIH HHS CA140388NCI NIH HHS CA141716NCI NIH HHS CA148085NCI NIH HHS CA148127NCI NIH HHS CA22453NCI NIH HHS CA54281NCI NIH HHS CA55769NCI NIH HHS CA58223NCI NIH HHS CA63464NCI NIH HHS CA68485NCI NIH HHS CA77305NCI NIH HHS CA87895NCI NIH HHS CA88164NCI NIH HHS N01 PC035139NCI NIH HHS N01 PC035145NCI NIH HHS P30 CA022453NCI NIH HHS P30 CA068485NCI NIH HHS P50 CA058223NCI NIH HHS P50 CA140388NCI NIH HHS R01 CA052689NCI NIH HHS R01 CA054281NCI NIH HHS R01 CA055769NCI NIH HHS R01 CA060691NCI NIH HHS R01 CA063464NCI NIH HHS R01 CA068578NCI NIH HHS R01 CA073629NCI NIH HHS R01 CA087895NCI NIH HHS R01 CA088164NCI NIH HHS R01 CA092447NCI NIH HHS R01 CA100374NCI NIH HHS R01 CA100598NCI NIH HHS R01 CA121197NCI NIH HHS R01 CA127219NCI NIH HHS R01 CA141716NCI NIH HHS R01-CA73629NCI NIH HHS R37 CA054281NCI NIH HHS RC2 CA148085NCI NIH HHS U01 CA063464NCI NIH HHS U19 CA148127NHGRI NIH HHS HG004726NHGRI NIH HHS R01 HG006399NHGRI NIH HHS U01 HG004168NHGRI NIH HHS U01 HG004726NHLBI NIH HHS HL084107NHLBI NIH HHS N01 HC065226NHLBI NIH HHS N01-HC-65226NHLBI NIH HHS R01 HL084107NICHD NIH HHS N01 HD033175NIEHS NIH HHS ES007784NIEHS NIH HHS ES011126NIEHS NIH HHS ES06717NIEHS NIH HHS ES10126NIEHS NIH HHS P30 ES007784NIEHS NIH HHS P30 ES010126NIEHS NIH HHS R01 ES006717NIEHS NIH HHS R01 ES011126NIGMS NIH HHS GM08016NIGMS NIH HHS GM091332NIGMS NIH HHS RC1 GM091332NIGMS NIH HHS S06 GM008016PHS HHS HHSN268200960009CWellcome Trust 090532
6 · The paper itself

Abstract

Recombination, together with mutation, gives rise to genetic variation in populations. Here we leverage the recent mixture of people of African and European ancestry in the Americas to build a genetic map measuring the probability of crossing over at each position in the genome, based on about 2.1 million crossovers in 30,000 unrelated African Americans. At intervals of more than three megabases it is nearly identical to a map built in Europeans. At finer scales it differs significantly, and we identify about 2,500 recombination hotspots that are active in people of West African ancestry but nearly inactive in Europeans. The probability of a crossover at these hotspots is almost fully controlled by the alleles an individual carries at PRDM9 (P value < 10(-245)). We identify a 17-base-pair DNA sequence motif that is enriched in these hotspots, and is an excellent match to the predicted binding target of PRDM9 alleles common in West Africans and rare in Europeans. Sites of this motif are predicted to be risk loci for disease-causing genomic rearrangements in individuals carrying these alleles. More generally, this map provides a resource for research in human genetic variation and evolution.

Indexed as

Africa, WesternAllelesAmino Acid MotifsBase SequenceBlack or African AmericanChromosome MappingCrossing Over, GeneticEuropeEvolution, MolecularFemaleGene FrequencyGenetics, PopulationGenome, HumanGenomicsHaplotypesHistone-Lysine N-MethyltransferaseHistone-Lysine N-MethyltransferasePRDM9 protein, human

Identifiers

PMID21775986
PMCPMC3154982
OpenAlexW2008712670

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.