Evidence map›Paper›PMID 21775672›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

The pivotal twin histidines and aromatic triad of the Escherichia coli ammonium channel AmtB can be replaced.

Jason A Hall, Sydney Kustu

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 24 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. The lipid environment determines the activity of the Escherichia coli ammonium transporter AmtB.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2019
    Article
  7. Article
  8. Article
  9. Biotechnology reports (Amsterdam, Netherlands) · 2015
    Article
  10. Direct observation of electrogenic NH4(+) transport in ammonium transport (Amt) proteins.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Jason A HallDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720-3102, USA. jahall@ucsd.edu
Sydney Kustu
University of California, Berkeley · US

Funding

GENETIC STUDIES OF GLUTAMINE SYNTHETASE IN BACTERIAR37GM038361 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI KUSTU, SYDNEY GOVONS · 1997 to 2006
$3.1M
GENETIC STUDIES OF GLUTAMINE SYNTHETASE IN BACTERIAR01GM038361 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KUSTU, SYDNEY GOVONS · 1986 to 2010
$1.9M
NIGMS NIH HHS GM38361NIGMS NIH HHS R01 GM038361NIGMS NIH HHS R37 GM038361
6 · The paper itself

Abstract

In Escherichia coli, each subunit of the trimeric channel protein AmtB carries a hydrophobic pore for transport of NH(4)(+) across the cytoplasmic membrane. Positioned along this substrate conduction pathway are two conserved elements--a pair of hydrogen-bonded histidines (H168/H318) located within the pore itself and a set of aromatic residues (F107/W148/F215) at its periplasmic entrance--thought to be critical to AmtB function. Using site-directed mutagenesis and suppressor genetics, we examined the requirement for these elements in NH(4)(+) transport. This analysis shows that AmtB can accommodate, by either direct substitution or suppressor generation, acidic residues at one or both positions of the H168/H318 twin-histidine site while retaining near wild-type activity. Similarly, study of the F107/W148/F215 triad indicates that good-to-excellent AmtB function is preserved upon individual and simultaneous replacement of these aromatic amino acids with aliphatic residues. Our findings lead us to conclude that these elements and their component parts are not required for AmtB function, but instead serve to optimize its performance.

Indexed as

Amino AcidsCation Transport ProteinsEscherichia coli K12Escherichia coli ProteinsHistidineMutant ProteinsProtein TransportQuaternary Ammonium CompoundsAmino AcidsAmtB protein, E coliCation Transport ProteinsEscherichia coli ProteinsHistidineMutant ProteinsQuaternary Ammonium Compounds

Identifiers

PMID21775672
PMCPMC3156211
OpenAlexW2029624623

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.