Evidence map›Paper›PMID 21775581›Full record

ArticleThe Journal of general virology2011

North American West Nile virus genotype isolates demonstrate differential replicative capacities in response to temperature.

Christy C Andrade, Payal D Maharaj, William K Reisen, Aaron C Brault

Open access · greenAbstract read
In one paragraph

Article in The Journal of general virology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 1 pooled it
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 1 synthesis or guideline pooled it, 33 citations in OpenAlex.

  1. Predictive modeling of West Nile virus transmission risk in the Mediterranean Basin: how far from landing?International journal of environmental research and public health · 2013
    Pooled it
  2. Article
  3. Review
  4. Article
  5. A panel of real-time PCR assays for the detection of Bourbon virus, Heartland virus, West Nile virus, andJournal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2021
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Climate change impacts on West Nile virus transmission in a global context.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2015
    Review
  16. Article
  17. Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Christy C AndradeCenter for Vector-borne Diseases and Department of Pathology, Microbiology and Immunology, School of Veterinary Medicine, University of California, Davis, CA, USA.
Payal D MaharajDivision of Vector-Borne Diseases, Centers for Disease Control and Prevention, Fort Collins, CO, USA.
William K ReisenCenter for Vector-borne Diseases and Department of Pathology, Microbiology and Immunology, School of Veterinary Medicine, University of California, Davis, CA, USA.
Aaron C BraultDivision of Vector-Borne Diseases, Centers for Disease Control and Prevention, Fort Collins, CO, USA.
University of California, Davis · USCenters for Disease Control and Prevention · US

Funding

Vaccines and Diagnostics TrialsU54AI065359 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI BARBOUR, ALAN G. · 2005 to 2013
$88.8M
Persistence of West Nile virus in CaliforniaR01AI055607 · NIAID · UNIVERSITY OF CALIFORNIA DAVIS · PI REISEN, WILLIAM K · 2003 to 2012
$4.4M
TRAINING PROGRAM IN THE BIOLOGY OF DISEASE VECTORST32AI074550 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI LANZARO, GREGORY C. · 2009 to 2013
$941k
West Nile Virus Genotypic Affect on Host CompetenceR01CI000235 · CI · UNIVERSITY OF CALIFORNIA DAVIS · PI BRAULT, AARON COLE · 2004 to 2006
$181k
NCPDCID CDC HHS CI000235NCPDCID CDC HHS R01 CI000235NIAID NIH HHS R01 AI055607NIAID NIH HHS R01-AI55607NIAID NIH HHS T32 AI074550NIAID NIH HHS U54 AI065359
6 · The paper itself

Abstract

The presence of West Nile virus (WNV) was first documented in California, USA, during the summer of 2003, and subsequently the virus has become endemic throughout the state. Sequence analysis has demonstrated that the circulating strains are representative of the North American (WN02) genotype that has displaced the East Coast genotype (NY99). A recent study has indicated that enhanced vector competence at elevated temperatures may have played a role in the displacement of the East Coast genotype by WN02. In the current study, four WN02 strains from California, including an initial 2003 isolate (COAV997), were compared to strain NY99 in growth curve assays in mosquito and duck embryonic fibroblast (DEF) cell lines at differing, biologically relevant temperatures to assess the relative temperature sensitivities of these natural isolates. COAV997 was significantly debilitated in viral replication in DEF cells at 44 °C. Full-length sequence comparison of COAV997 against the NY99 reference strain revealed non-synonymous mutations in the envelope glycoprotein (V159A), non-structural protein 1 (NS1) (K110N) and non-structural protein 4A (NS4A) (F92L), as well as two mutations in the 3' UTR: C→T at nt 10 772 and A→G at nt 10 851. These non-synonymous mutations were introduced into the NY99 viral backbone by site-directed mutagenesis. A mutant containing the NS1-K110N and NS4A-F92L mutations exhibited a debilitated growth phenotype in DEF cells at 44 °C, similar to that of COAV997. One explanation for the subsistence of this genotype is that COAV997 was obtained from an area of California where avian host species might not present elevated temperatures. These data indicate that the NS1 and NS4A mutations identified in some WN02 isolates could reduce thermal stability and impede replication of virus at temperatures observed in febrile avian hosts.

Indexed as

3' Untranslated RegionsAmino Acid SubstitutionAnimalsCell LineCulicidaeDucksFibroblastsGenotypeMolecular Sequence DataNorth AmericaPoint MutationRNA, ViralSequence Analysis, DNASequence HomologyTemperatureViral Nonstructural Proteins3' Untranslated Regionsnonstructural protein 1, West Nile virusNS4A protein, flavivirusRNA, ViralViral Nonstructural ProteinsViral Proteins

Identifiers

PMID21775581
PMCPMC3352365
OpenAlexW2162673641

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.